RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5325

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

20180763

End:

20181045

Strand:

.

Ref_name:

OSA-LNCN5325

Sequence
(OSA-LNCN5325.1):

AAAAAAAAAGGGUGUAGCUAUAUUUAUGGCGCCAUAUUUUUCAUCAAAAAAUAGUCGGCAUGUAUUUACAUUGUAAGUCUCUAAAUUACAUAUGUAAUUUUAGUGUAUUUACAAUAUAAGUCUCAAAAUUACAUAUGUAAGUACUAAAAUUACAUAUGUAAAUUCGAAAAUUACAUACUAAUUACAUAUGUAAGUGGGGUGUAAAUGAGGUGUAACUACUGUGUAAGUGGCUGAAAAAAAAUCGACUGUAACAUAUGGCGCUAUAUUUCUAGCAACUCUGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

340

LEP:

69.11%

ME_num:

115

MEP:

23.37%

HE_num:

36

HEP:

7.32%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.88

Avg Expression:

3.20

Tip: OSA-LNCN5325 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h6.829545866256060.000360031352511355
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h6.193088676565220.000604197149451711
3IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)6.911844222945260.000251413015305874