Chr:
Chr5
Start:
19741874
End:
19759098
Strand:
-
Ref_name:
OSA-LNCN5315
Sequence
(OSA-LNCN5315.1):
UUUUCCUCCAAAAAAUUAACUGAUGUAAUUACAGUACAUUCGUAGUGUAAUUACACUUUACAGUGUAAUCACACUACGGUUGUACUAUAAUUAUAUCUGUCAAAUUUUUAGGAGAAAAUUUAUCGACAAAUGUAUAGGUAGUCCCUUACUUUUAAAGCAACAUAAAAACGACUACCUUAAUUAAACUAGGUGGGAGGCCCACGUAAUUAUACGGCUAACACCCAUAUAAAAUUAUCUAAAUUGGUUUACACAUUAUUUUUUUAGAAAAAUUGUUAGAAUUUUAAAAAAUUGAACCUUACUAUCAUCGGGUUCCUAAUUUUAUAUUUUUUUAAAAGUCACACCAACCAUCACCUCCUUACUCCUUUGUCUGCUCGAUCUGUCAUGACUUCUUUAAAAAUCUUGAUUACCUUGUAAUUUUUAAGUUUAUUAUCUUAUUGAGUUUUGUUUUAUAGUUUAUAGAAGUCACAUCAAACACUAUCUAUGUACUCUUUACAGCCCGUUCAUUGUUCCUUCUCUUUAUUCUCACUAGUAUUUGAAAAGCUAAACCAAUUCAUUGUUGGAUUAUUCUUUUACAUCCUAGAAGUCAUGUCAGCCGCUGUGAUCCUAACUAUCUGCCACAACUCUUAAUCAUUAUUAGGAUUCUAAAAAUCAAAUAUAAUCAUUAUUGGGGCUUUGUUUUAUAAUUUUUAUAUUAUAUGUCCCAUUAGACGAUAUCAUCCUACUCCUUUACGGUUCACCUGCUAUCUCUUAUUUAUUGUCAUUUGCCACCGUUGUAUUUUAGAUGGAAUGUUUUUCAAUAUUUCUUUUUAAUUUCAAUUUUAUAAAUUAUAUUCCUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.46%
ME_num:
MEP:
73.58%
HE_num:
HEP:
22.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.88
Avg Expression:
28.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.78038567871057 | 0.00282498721178027 |
| 2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.66254246642859 | 0.0313129162970745 |