Chr:
Chr5
Start:
19028156
End:
19029275
Strand:
+
Ref_name:
OSA-LNCN5301
Sequence
(OSA-LNCN5301.1):
AACUAAACAAGACAAUUAAGUUCCAAAUUAUAAAUUCUGGCUUUGGUUUAUAAGGAAACGGGCAAAAAUCAUUUUGUUCCCAAGGAGGCCCUAAUUUCCGAGCAAGCACAAAAACGGCGGGGGACACGAGCACGUUGAGCAGCGGUGGUGGAGGCGCCGAUUGGCUGGCCGAUGCGACCACCGGCGUCCGUCUCGCACCCCCGCAUUUGUGAGGAACAAACCCGCUUUUCCCCGCAGCGCUUUUGCAAAAGCCAUCUUUUCUUGCCAAUCCACUCGCUCACCCAUCCGUCCAUCCAUCCACCGCGGCGUAUUAUAAUCUGCGCCAUUAUCUCGCCCGCGCCUCAUGAUCGCCGCAAGAUUCCCCUAGCAGACACAAACCCAACCCAACCCACCAUCGCUAGCUCCUCCUCCGCUUUCUUUUUCUCCCCCAACCAAACCACCCACUCGCCGCACACGCACAGGUGACAAAGCCCACACUGCCAAUGCCGUUUUAAUACCGGCGAGACGCCGGGCACGCGCGCGCGCGCGGCGGAUGACGAAACGCACCGGCACAGGAAGGAUGGCGGCGCGUGCAAUCCACUGUACCACGCUGCUCUGCGAACCUACUAGCCGUAACAGCAAACUGUACUACCUACUUGUAGGGGUAAAAAAAAAACGAAAAAACGGGGAGUAAAUUAACUGUAGCAGUAACUAGUAGUAUAGGCGAGCACGAUGCCUCGAUGCGUAGGAACGAAUGAUUUCUCCGACCAGCAUUAGCACGGAUCUCGAAUUCUCGAUCACGGCGAGAGAGGAGAUCAGCGUGAAUUCAUUCUCGCACGCCUUUUCACCGCAUCGCCAUCGCUACGCUACUCCCCCUCUUCUCAAGCAAGCUUGCUGCUGCAUCAACCACCACCACAGGUGGAUCCCGAAAUUCUAACGGAAAAACUACUAGUAACCGGAAUCGUGGGAUGAAAUUGGAAUUGUGGUGGGGGACAAUCCUAACGAACCAAGAACCAAAUGGACGUCGCAACAGCAAAGCGAUUCAACGAAUGUGGAAAUGGAAUUGCGAAGGGUGGGGAUUUGGGGGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
35.77%
HE_num:
HEP:
7.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.83
Avg Expression:
4.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.87795269053976 | 3.22688456742875e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.43358388253927 | 0.00030810272646696 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.03380112098331 | 9.95133062375037e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.79768948235715 | 1.29676865525036e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.27698012443254 | 1.09912185285353e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.56173232875932 | 4.03910453198144e-05 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.62291567248709 | 0.0103649902351725 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.50416908902654 | 6.98625732961559e-05 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.20233835791466 | 0.00298167702177303 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.52431200934898 | 0.030896253966382 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.7331668120575 | 2.74366959884916e-07 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.7343801785482 | 0.000430646210461778 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.44352059570604 | 0.000165624024731158 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.09414369293819 | 0.00218226934201616 |