Chr:
Chr5
Start:
19026348
End:
19027897
Strand:
+
Ref_name:
OSA-LNCN5300
Sequence
(OSA-LNCN5300.1):
CUGUUUGAUGCCACUCUUGACAGUAAUGUGUUACCAGCCGGGGUGAUGCCCAUCUCUCCGAGCAACUAGUACUACAUAGCAUCACCUCGAAUGAAUUGCUGGAGUAACGUGCUGUAAAUGGUGUGAUUUACAAUGCCGGGGGGACACUGUAGUUUACUGCGGCGAGCCCAAGAUCUGCUACAGUAACAGUGGCUGGGAUUAUCUUAUAUUCUUUAUUUAUUAGGUGCGGUACAUGGAUUUCAUUGGGCUAUAAAUGGAAGAACACACUAUAAUAACUCGGGUCGGCCAGAUUAAUUGGACUGUGCAACCAACUCUAUGUUUGUGAAGCUGGACGUGGAGUGGAUGGAGGUAGGUACACUGCUGCUGUGGAGCCCCUCUUGCGUUUCCUACCCCCAUAAAUAAACGAUGCCCAAAUCUGACAUAAAGUAUUUCAAAUCUCAGUUGGACUACUUAAUUGAGAUUCAACUUCUCCCUCAUUCCGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.78%
ME_num:
MEP:
40.24%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.87
Avg Expression:
8.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.73738410925132 | 2.52344697671954e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.06367700152755 | 0.00273643870579028 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.98704847611613 | 6.8016791257389e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.87928343161712 | 1.17984963857916e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.08856262316372 | 3.22934018105401e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.20481033207743 | 0.000743668915190659 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.28276726547064 | 0.0149957607607043 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.93738428112816 | 2.35437973531587e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.54430545588003 | 5.4113458844817e-07 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.54495219359373 | 0.00345659630663881 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.31482146536205 | 0.000149666075176915 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.00944276903543 | 0.00105490054531777 |