Chr:
Chr5
Start:
18969184
End:
18971071
Strand:
+
Ref_name:
OSA-LNCN5298
Sequence
(OSA-LNCN5298.1):
GGGAAAUUAAAUUAAAAAAUAUGCUGUUUAUUUGUUUCUUUCUCAAAAAUAUUCGGGUUUCAAAUUAUUUGGCACAGAUAUACCAUCGGUAUCGCUCAACAAAUAUGCGAAAAUGAUAUGGGUUGACGACACCGAUGGUAUCACGCAGUAACUGAGCAAGACCGCUCGGUCUAACGCGAGAUCGCGCGGUCUCGCACUGCCAAACAGCGACACCGUUUUGAAAAAUAAUUAAUUAGUGAUUAGUUGUCAUGAUUAAAUAUUAGUUAAUUAAUAAUUGAUGAUUAAUCAUCCUAAUUAGUGAUUGAUUAAAGCUCAGAUAACAAGAUAGCCGGUCUCGCUCAGCUGUUGUAGCUUUUCGGUUGUGCGAGACCGCUCGGUCUCGUGCCGUUGUCACGCGACACCGUCAGUAUCAUCAGCCCUCGGUUGUGCGAGACCGCUCGGUCUCAUGCGGUUGUCACGCGACAAUCGUCAGUAUCAUCAGCCCACGUCAUUUUCGUGCAUCCGUUGAGCGAUACCAACCGUAUAUUUGUGCAAAACAAUUUAAAACCCGAAUAUUUCUAAGAAAAAACAAACAAUAUAUUUUCAAAUUUAAUUCUUUUGAUGGGAAGAUGUCUUCCUGUUCAAGACAUCAAGCAAAACCUGAUGAAAGAAGGCAGUGACUUGCUGAGUUACUACUGCUCCCAGACCAUGAACAGCUAGGCCGUCAUAACAUGUAUAAAUGUAUUAGUUCUGUUAGAAACAAUGCUGGGAAACGUAGAAUGUGGUAGGAGUAGGUAUUGUCGUCGAUGCAGUGGCAAAGCCAAAAAAAUCUUUGAAAAUAAGGUUAAACUUGUAUCUUUAAAUUUCUACUGUAUUUUAAGAUAAUUUCUACUACUUAAAAAGUUGAAGUUGUUUUCCUUGUCCGUUUAAUACAAAAUAGAGUGAUUUUCGUCAUAGCAGAAAAAAUCGGACGCGAAAAAAAAGAGCGAAAAUAAUCGGACGCGGAAAAAAGCAAGCGCCGCACACCCCCUCCUCCUGGGCGCUAGCUUCACUUCUCCUCCCCUCUUGAUCAUAUCAAUCAUACUUCAUCACAUAUUCAACCACAAGAGGAAAAAUUACACAGCAAAAAUUAUCCGUGCAUAGCACCGCCUCCUCUCGCUUCCUCCACCGGAUCUGGAUGAGGGGACCGCCGCCGCUGCCGGCGAAGGGGGCCACUGCCAUUGCUGGGAGAAGGGGCCGCUGCCGCUGCCGGAAGAAGGGGGCCGCCGUCGCUGCAAGGAUAAGGGGGCCACCGUUGAUGCCUCCUUACAGCCGCUGCCGCUGCCGGAAGAAGGGGCUGCUGCCGCUGCAAGGAGAAGGGGGCCGCCGCCGCUGCCUCCUUGUGGCCGCUGCCGCUGCCGGAAGAAGGGGCCACCGCCGCUUCAAAGAGAAGGGGACCGCCUCCGUUGGAGAAGGGGCCGCCUCCGUUGGAGAAGAGGCCGCCGCCACCCCCGCCGCCAGCGCGUUGCUGCUAGGAGAAGGAGGAGGCGAGAGAGGGCGAGAGGGGAGGGGGGUGCAAGUGGAUGGAGUGAGAAGUGUGAGGAGCGAGUGGAUGAGGUAGAAUGGCCGCGAUCGAGAGAAGCGAGUGGAUAAGGAUGUUGACCAGUCGGUUUUUUAUUGGUGACGUUUUCUUUAAGUAGAACCGACACCUACAUUUAUAUUAUAGGUAUUGGUUCUUUUAAAAAAACCGGCACCUAUAACAUUUGUAUCGGGUUUUACGCUAAAACAGACACCUAUAAUAUUUGUACCAGUUUUUUGCUAGAACCAACACCUAUAAUAUAAGUAUAGGUGUCGGUUGGUGUCGGUUUUUCUUGAGAAGCGGCACUUAUAAUGCUUAAAGGUGUCAUUUUUUUAUUUUAUUCAUCGUGCG
Sequence
(OSA-LNCN5298.2):
GUUCAAGACAUCAAGCAAAACCUGAUGAAAGAAGGCAGUGACUUGCUGAGUUACUACUGCUCCCAGACCAUGAACAGCUAGGCCGUCAUAACAUGUAUAAAUGUAUUAGUUCUGUUAGAAACAAUGCUGGGAAACGUAGAAUGUGGUAGGAGUAGGUAUUGUCGUCGAUGCAGUGGCAAAGCCAAAAAAAUCUUUGAAAAUAAGGUUAAACUUGUAUCUUUAAAUUUCUACUGUAUUUUAAGAUAAUUUCUACUACUUAAAAAGUUGAAGUUGUUUUCCUUGUCCGUUUAAUACAAAAUAGAGUGAUUUUCGUCAUAGCAGAAAAAAUCGGACGCGAAAAAAAAGAGCGAAAAUAAUCGGACGCGGAAAAAAGCAAGCGCCGCACACCCCCUCCUCCUGGGCGCUAGCUUCACUUCUCCUCCCCUCUUGAUCAUAUCAAUCAUACUUCAUCACAUAUUCAACCACAAGAGGAAAAAUUACACAGCAAAAAUUAUCCGUGCAUAGCACCGCCUCCUCUCGCUUCCUCCACCGGAUCUGGAUGAGGGGACCGCCGCCGCUGCCGGCGAAGGGGGCCACUGCCAUUGCUGGGAGAAGGGGCCGCUGCCGCUGCCGGAAGAAGGGGGCCGCCGUCGCUGCAAGGAUAAGGGGGCCACCGUUGAUGCCUCCUUACAGCCGCUGCCGCUGCCGGAAGAAGGGGCUGCUGCCGCUGCAAGGAGAAGGGGGCCGCCGCCGCUGCCUCCUUGUGGCCGCUGCCGCUGCCGGAAGAAGGGGCCACCGCCGCUUCAAAGAGAAGGGGACCGCCUCCGUUGGAGAAGGGGCCGCCGCCACCCCCGCCGCCAGCGCGUUGCUGCUAGGAGAAGGAGGAGGCGAGAGAGGGCGAGAGGGGAGGGGGGUGCAAGUGGAUGGAGUGAGAAGUGUGAGGAGCGAGUGGAUGAGGUAGAAUGGCCGCGAUCGAGAGAAGCGAGUGGAUAAGGAUGUUGACCAGUCGGUUUUUUAUUGGUGACGUUUUCUUUAAGUAGAACCGACACCUACAUUUAUAUUAUAGGUAUUGGUUCUUUUAAAAAAACCGGCACCUAUAACAUUUGUAUCGGGUUUUACGCUAAAACAGACACCUAUAAUAUUUGUACCAGUUUUUUGCUAGAACCAACACCUAUAAUAUAAGUAUAGGUGUCGGUUGGUGUCGGUUUUUCUUGAGAAGCGGCACUUAUAAUGCUUAAAGGUGUCAUUUUUUUAUUUUAUUCAUCGUGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.29%
ME_num:
MEP:
39.63%
HE_num:
HEP:
41.87%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.91
Avg Expression:
55.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Azucena // root // control--/--Azucena // root // Al | -1.3188482121561 | 0.00285116539928608 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.48626763557979 | 0.0245877541497753 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.56664160052936 | 2.61022529689409e-25 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.02181174769622 | 4.40775319568089e-06 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.80662167687138 | 0.032891903127819 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.85415461709621 | 0.00180098292481261 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.76426526530902 | 3.19692836333672e-88 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.23329520317009 | 0.00586318440803526 |