Chr:
Chr5
Start:
18515428
End:
18516245
Strand:
-
Ref_name:
OSA-LNCN5286
Sequence
(OSA-LNCN5286.1):
GUGAGUGUAUCUGCGUAUGUUUCGUCCGUGUGCCGAGAAAGUUGGCAGGUGUAGUACAACACUUGAAAGAGAGGGGCACCACAAAGUGUGGCAGGUGACUUUGGUAGAGGUGAAAUGUGGUGGCCUUGUGCUUGUCCUCUACUAGCUAGUACCACCAAUCUACCACGAAGGAUUGGAAUGAAGAGUGCAACAACCGAUUGCUUUUUCUCCUGAAGGCGAUUGCAGACCAUCCGGUUGUCAAGUUCACUUCUUAUUAGUUCUUCCAAAGUUUGCUUUUGGAUCACCUUGCGAUGGAAAUAGCCAAAGAGGUCUCUUGUCGCCACGAGAAGCUCAUGCUGUUGAGACUUUUUGAUGGGGGGUGCAAGCGCCACAUCAGCAGAAGAACACCACAUAUUGCUCAUGAAAAAAUCAUGACUAUCAGUCACGCUUUGUAUUAUUAUACGUGUGGUAAAUCAAAAUUGUCGUCCGAGUAUGGCUCCAACAAAAUACAUCUUUGGAUCAGUCUGAUUUAAUCUGAUAGCGUAGCUUAGCUAGAUAGAAAGGGAAGGCAUGGAAAGGUCUUUCCAUCACAAGCUGUAGCUCAUGUUGCUGAAAUGGAUGGUGCAAGCGCCAGAUCAGCAAAGAAGCAGCACCACAUAGUCACGAUCGAAAUCGGGCGUAAACAUAAAAUUGGUACUAUUCGCUAUAUGUCAUUGUCUGGAAAUAUGACCACUAGUAUUAAAGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.15%
ME_num:
MEP:
2.03%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
0.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.56031515004833 | 0.0411094948361387 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.30495632771352 | 1.84191768179735e-07 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.78873752131584 | 0.00139598134423508 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.19805374218394 | 3.99632767250526e-06 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.16095146774944 | 0.00376276489087796 |