RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5280

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

18146346

End:

18148615

Strand:

-

Ref_name:

OSA-LNCN5280

Sequence
(OSA-LNCN5280.1):

GCUCAUUACUGCCUUAUGGCAGAUUCUCUGGUAGCCUUGGUUAUGAUGUAAGUAGCCAUCAGCAUCAAGGCUGAUUAUAAGUGCAUUUUACAGAACAAAGGCCUGUUCAUCUGAUAGACUUACAACUAGCUAGCUUUGCAUGUCCUUCCUCCUGCCAGUUGUUUUCUUGUAUAUGUAACACUACUUAGGCUUUAUAUUGGUCUCUCUUCGUUGUUGUCGUGAUUGCCAUCAUCCUUUUUAUCAAUUGAAUUGUGGCACAUUCUAACAAUUUUUCUCAUAUUGCAGUAUGGUUAUGGCCCCAGUGGAAAUAGUAGCAGGUCAAGACCAGAAUCUCGAUACAGACCGUACUGAGGUUCUUAUUGUAGGCAUGGCAAUACCGUAUAUCUUGAGAACAAUAUACGUCUGAAACCGGUGCUCUCGAGUCUUGACAAACAUGUGCUUCAGGAAAAUUCUGCAAGUUUGGGUUGCUGCUUGAUAUCACUUCUACACUGGAAAAAUAAUCAGGUAUAGAGCAUCCCGAAGUAUCAAAACCAAUGCAAAUCGAGUUCCACUGCAUUUUUGUCAUACGGAGCGCUCACAUGGCUGGAUUCAGCUUCGGUGACAUUGCUAUGGCAAGUUACGGUGUGACAUAGAAGCAAUCUGAGCCGUCCAAAACGAAUCCAAUGUCUGCUUUAGUUGAGCCCGCACGCGGACAAAAAAAAAAUCCCCGUUCUCAUCCCUGUAGCGGAGACGUACUGGCGGGAGACGACGCCCCCAAUUCCUCCUUGCGCGCGUCCGAACGUCGCCGCGAGCCAGUGGGGAGAGUCGCCGCUGAAUGCAGGAGAGUCGCCGCCACCGUGACCGGAGAGGUGACAGGCCGAUGAGCUCGCCGCGAGUGGGGAUGGGGUCGCGCGGCUGCCGCGUGAGGCCAGGGCCCUGGCCCUGCCGUGCCGCCGCGUGGAGGCGGCCGUCCGCCGGGCCUACACGCGGCCGGCCGGAGGCGUGUGGAGGCGGCCGUCCGCUGGGCCUGACGUCGAUGAGGUCCAGCCGCCUCCCGGUGCGGAAGAGUGCACAGCCUAAGGUAGAGAACAAACAGCUAAACUGCUGCUGCUGCAAUUUUGGAGAUACAGAGCAAACAACUAAACAGCUAAACAGCAAUUUUGGAGAACAAACAGCUACACAGCUGCGAACACCAUAGCCUCCAUCGGCACCCCGACGGCCGGCCACCUCCAUCGCCAAGGGUCACGGUGGCUGGCUGCCUCCAUCCAUCCAAAAGUUGACGCCAUUCUCUAGACAGUCUA

Sequence
(OSA-LNCN5280.2):

GCUCAUUACUGCCUUAUGGCAGAUUCUCUGGUAGCCUUGGUUAUGAUUAUGGUUAUGGCCCCAGUGGAAAUAGUAGCAGGUCAAGACCAGAAUCUCGAUACAGACCGUACUGAGGUUCUUAUUGUAGGCAUGGCAAUACCGUAUAUCUUGAGAACAAUAUACGUCUGAAACCGGUGCUCUCGAGUCUUGACAAACAUGUGCUUCAGGAAAAUUCUGCAAGUUUGGGUUGCUGCUUGAUAUCACUUCUACACUGGAAAAAUAAUCAGGUAUAGAGCAUCCCGAAGUAUCAAAACCAAUGCAAAUCGAGUUCCACUGCAUUUUUGUCAUACGGAGCGCUCACAUGGCUGGAUUCAGCUUCGGUGACAUUGCUAUGGCAAGUUACGGUGUGACAUAGAAGCAAUCUGAGCCGUCCAAAACGAAUCCAAUGUCUGCUUUAGUUGAGCCCGCACGCGGACAAAAAAAAAAUCCCCGUUCUCAUCCCUGUAGCGGAGACGUACUGGCGGGAGACGACGCCCCCAAUUCCUCCUUGCGCGCGUCCGAACGUCGCCGCGAGCCAGUGGGGAGAGUCGCCGCUGAAUGCAGGAGAGUCGCCGCCACCGUGACCGGAGAGGUGACAGGCCGAUGAGCUCGCCGCGAGUGGGGAUGGGGUCGCGCGGCUGCCGCGUGAGGCCAGGGCCCUGGCCCUGCCGUGCCGCCGCGUGGAGGCGGCCGUCCGCCGGGCCUACACGCGGCCGGCCGGAGGCGUGUGGAGGCGGCCGUCCGCUGGGCCUGACGUCGAUGAGGUCCAGCCGCCUCCCGGUGCGGAAGAGGACAGUGCACAGCCUAAGGUAGAGAACAAACAGCUAAACUGCUGCUGCUGCAAUUUUGGAGAUACAGAGCAAACAACUAAACAGCUAAACAGCAAUUUU

Sequence
(OSA-LNCN5280.3):

UAUGGUUAUGGCCCCAGUGGAAAUAGUAGCAGGUCAAGACCAGAAUCUCGAUACAGACCGUACUGAGGUUCUUAUUGUAGGCAUGGCAAUACCGUAUAUCUUGAGAACAAUAUACGUCUGAAACCGGUGCUCUCGAGUCUUGACAAACAUGUGCUUCAGGAAAAUUCUGCAAGUUUGGGUUGCUGCUUGAUAUCACUUCUACACUGGAAAAAUAAUCAGGUAUAGAGCAUCCCGAAGUAUCAAAACCAAUGCAAAUCGAGUUCCACUGCAUUUUUGUCAUACGGAGCGCUCACAUGGCUGGAUUCAGCUUCGGUGACAUUGCUAUGGCAAGUUACGGUGUGACAUAGAAGCAAUCUGAGCCGUCCAAAACGAAUCCAAUGUCUGCUUUAGUUGAGCCCGCACGCGGACAAAAAAAAAAUCCCCGUUCUCAUCCCUGUAGCGGAGACGUACUGGCGGGAGACGACGCCCCCAAUUCCUCCUUGCGCGCGUCCGAACGUCGCCGCGAGCCAGUGGGGAGAGUCGCCGCUGAAUGCAGGAGAGUCGCCGCCACCGUGACCGGAGAGGUGACAGGCCGAUGAGCUCGCCGCGAGUGGGGAUGGGGUCGCGCGGCUGCCGCGUGAGGCCAGGGCCCUGGCCCUGCCGUGCCGCCGCGUGGAGGCGGCCGUCCGCCGGGCCUACACGCGGCCGGCCGGAGGCGUGUGGAGGCGGCCGUCCGCUGGGCCUGACGUCGAUGAGGUCCAGCCGCCUCCCGGUGCGGAAGAGGUGCGUGCGCGCCACUGUGCUUCAUCAAUUUUGCUGACAGUGCACAGCCUAAGGUAGAGAACAAACAGCUAAACU

Sequence
(OSA-LNCN5280.4):

GCUCAUUACUGCCUUAUGGCAGAUUCUCUGGUAGCCUUGGUUAUGAUUAUGGUUAUGGCCCCAGUGGAAAUAGUAGCAGGUCAAGACCAGAAUCUCGAUACAGACCGUACUGAGGUUCUUAUUGUAGGCAUGGCAAUACCGUAUAUCUUGAGAACAAUAUACGUCUGAAACCGGGAAAAUUCUGCAAGUUUGGGUUGCUGCUUGAUAUCACUUCUACACUGGAAAAAUAAUCAGGUAUAGAGCAUCCCGAAGUAUCAAAACCAAUGCAAAUCGAGUUCCACUGCAUUUUUGUCAUACGGAGCGCUCACAUGGCUGGAUUCAGCUUCGGUGACAUUGCUAUGGCAAGUUACGGUGUGACAUAGAAGCAAUCUGAGCCGUCCAAAACGAAUCCAAUGUCUGCUUUAGUUGAGCCCGCACGCGGACAAAAAAAAAAUCCCCGUUCUCAUCCCUGUAGCGGAGACGUACUGGCGGGAGACGACGCCCCCAAUUCCUCCUUGCGCGCGUCCGAACGUCGCCGCGAGCCAGUGGGGAGAGUCGCCGCUGAAUGCAGGAGAGUCGCCGCCACCGUGACCGGAGAGGUGACAGGCCGAUGAGCUCGCCGCGAGUGGGGAUGGGGUCGCGCGGCUGCCGCGUGAGGCCAGGGCCCUGGCCCUGCCGUGCCGCCGCGUGGAGGCGGCCGUCCGCCGGGCCUACACGCGGCCGGCCGGAGGCGUGUGGAGGCGGCCGUCCGCUGGGCCUGACGUCGAUGAGGUCCAGCCGCCUCCCGGUGCGGAAGAGGUGCGUGCGCGCCACUGUGCUUCAUCAAUUUUGCUGUGUGUUCCCCUUUCAGUUGGGUGCUUUGGCUCUGUUGCUCGAUUAGUGCUAGCUGUUGGAUUAGCUAGCAUAUGUUCAGUAUAAUUGGCGAGAUGUGAUUAGGGCUAGCUGUUGGAUUAGCUAGCAUAUGUUCAGUAUAAUUGGUGAGAUGUAAUUAGUGUUUCCUUUGCUACUGGAUUCAAGAGUGGUUUACUGUUGGAGAAUGUGGGCUGCACUUGUAGAGCGAACUGAGAAGUAGUAGUAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

165

LEP:

33.54%

ME_num:

302

MEP:

61.38%

HE_num:

24

HEP:

4.88%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.81

Avg Expression:

3.88

Tip: OSA-LNCN5280 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA3.704294376225830.0108552234848786
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA3.111072856797480.0371148080945772
3Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi-1.591819629307610.0021886052185146
4IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h1.669065984140230.0477272401835184
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-2.025720663546169.68043216132686e-06
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286-1.270140127323110.0145987364618043
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-1.624069890410972.17437069370437e-05
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA3.205049511594160.0171309645571225
9Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-1.426815974563950.00146594499689728
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-2.028331732837562.4548220729698e-09
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105-1.358662914847040.00115160991323901
12Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-1.654205813959420.000135993331546933
13Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331-2.051217302789820.00010139803649047
14Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"-3.106682929135840.00127034500373033
15Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.84006134980637.0200502794535e-07
16Nipponbare // leaf // control--/--Nipponbare // leaf // drought-3.106738641751490.00128377849992756
17Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"-3.106916473882270.00127493382038631
18Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.738189443088612.02185145521564e-09
19Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-2.571145698758713.15033862995673e-10
20Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-3.114196543478024.93500274190084e-10