Chr:
Chr5
Start:
18107651
End:
18110779
Strand:
+
Ref_name:
OSA-LNCN5276
Sequence
(OSA-LNCN5276.1):
GUUAGUAAAAUUUUUUAUUACUUUAAUUAUUUACAGCAAUUAAUUAACUAUUACUAAGCUUGUGGUUGCUUUAUUUUUUUCGAUGUGCAUUUUAAGACUUGUUUAUGUGCGUUUGUCUAGUACGGACUUAUAUAAUACUCCGUAAUUGGUUGUAGCUCAUUGAGUAAAGGCUGGGAUUCUAUUCUAUUAUUAAAAAAAUAACUAAUUUAUAGAGCUGUAAAUAAUUAUGUUUUUAUGUUUAGUUACUGUUAAUGAACAGUAGUGCAUGGGUGUACAUGUAUUACUGUUUAAUAUUAAUCUCGUUUUAAAUCGGGAAAUGGGUACACAUAGCAAGAAAGGGCGGCCGGAGAGUAGUGUAGAAAAGUGACAGAAUGCGAUGCAUGUACUACUAUUGAAGAAGUACAAAUACAUACACAUCCUUUUUUUGACUUAUUAUUUUUUCGAUGAAUAAUAAUUUAAAUUUUAAUCUUAAUCUCAAGAAAAAGACAUUUAACUGAAAUUUGUAUGCGCGCUUGGACUAGCUUGAUUUAAUUUGCAUAUUUUUUUUGUGCUUCUCUCUCUUUCUCUAGACUCUACUACUGGCAGACAAAAAUGGGAUGUUUUUAGCUUUGUUUUACUGAAAAAUAUUAUACUGAUUAAGUUGGUGUCAAGUGCACGCACACUGACGAGGAAUAAUAUAUAUUUGCUUCUUGCUUAGUUGCUUGAAUGCUGCAGGUUUCCUGCUUCUCUAGCUUGACCUAGUUGUCACUCGUGACUAAAGACGUGUCUAAAGUGUGUAAUAACUUUAACAAGUAUGCUAAUAAGCUAGCUCGUGACCAAGGAUAACCUUAAACAACGGGAUAAGCUUUUGACCCUAAGUGGAUUAAUCUCUUACUAGCUAGCAAUCUCACUCUACUACCUAACCCUGAAAAUUAGGUCUAAUAGUUGAAAACUCUCCCCUGAUCACGGCAUCUAGCUAUAGCUCUUGAUGCAAUUUUUUUUUUUGACUUUGGAAAGCUAUCAAGUGUUUAUCCUACAACAAAUAGCAUGUACUUGCACGCCACUUGUCAGCUAAUUUCGGAGAUGGACAAGGAAUAUACUACCCAAGAAACAUAGAGAAAUUGAGAGAGAAAAAAUGAGAUAGAGAAAUUGAAAGAGAGAGAGAGAGAGAGAGAGAUGGAGAUGUAAUGGUUUGGUCCAACGUCAGCAGCAUGACCGUUGGAUAGUCCACGUAAGGUCGAUGUGGCCAAAGGGGAAGCUAGCUAGCUAACUAACAAAGCAGCAUCUAAUAAGCUUUAGCUGAAGCUUAGUUUAGACCACCCGUGUGCUAAUAGUCAGUGAGUGCAGUGGAGUAAUAUGCAACUACUCAAGAAACGUACAUGUCCAAUUAAAUGAAGCACACCCCUACAACUUACUAAUUGCUCCAAUUUGUCAGGUCAUAACAUGCUUUAGGACAACAUAAGCAACACCUGUCCUAACUAAUUAAUUUCUGACUACUGGUGAUCAUGGAUGUGCCAUGUGUUUACUACUACUCUCUUUACAGUUUAGUUGCACUAUAUGUGUCAAUAUUUGUGUUAGAACAAGACUAAUAGCUAUAAUAUGUAGUACACUAUUUAGUAGUAUAUAUCCAUCAUUAGAUAUUGUUAGUGAGUGAGUGAGUUAGUUACUAGCUAGUACAACAUGCAUAUAUCUUACUUAAAGAAUGGAACAGUGUUGGUACAAGAUAUGGGAGUUUGUGUCAACCUGGAGGACCAUUGGACUGGGCAGGUACAAUAUCAUGCAUCAUUUGAAAAAUGUCAAGCGAUAGAUAUAUAUAUAUCUAGAGAGAGAAAACUAAAGACGACAGAUAAUGAGAUAUGGUGUGGUGUUGGGUUAGGGGGUGGUUAAGCAGUUGUUGCAACCGAAUCAAUAAGGGAACAAACGAAGCGGUAGGGAUCAAGAGAGAGAUAGAAAAGCUUAUAUUUGUGAGAGAGAUAGCACUUGAUAAAUUGAAUUAACUUUCAUGAAUGUCAAAAACAAAAAGGCUAUCUCCAGUAGCUGAAUUCUUAGCCUAACAUGACUACUGAUGAGAGAUAGAAAGAAAGAAAGAUAUAAAGCUAGGUUAUGUGUUGAAACAUUCUAAAGUUCCAAAAGAUGCAAGCAACUGUGAGAUGACAUGCAUGCAUGCACCAAACAUGCAAAGACUUCAUCUGCAAGAUUGUUAGUUAAUUUGUGUACGAAAUGUGCCUCUAAAAGCUAGCUGCUAGCUAGCUAGAAACAUCCCUUUCGGCAUGCUCCCAAGAUACUAUAUAUGCUUGCUUGCAGAAAUUAAUUACUACUCGCAGUAAUUUUUCUUGUUAAUUAAACUGCAGUCAAUUAUACUAUAUUCUUCAGACAUAUAUAUAUAUGCACUUUUGUUUUGGUGAGGUGCCACCACUCAAAAAGGAUAGAUAUAUCUUUGAGAGAACGACUCUCGAUAAGCAAAAAUUCAGAGAGACGAAGACGACGAUGCGUGUGAGUGAUGGGCAGAAUGAGACGGCACGAGACGAGCUUAAUUAACCUUCUUUCAGCAGCAGCAGCAGCAGCAGCAAUUAAGCAGCAGAAGAGAAUAAUUAAACUCGCAGUGAGAGCGACAGGCACCGAAACUGCAGGGGGAGGCGUUUAACGAGAUGACUCGCUAACGAGAGUUGUUAUCUCUCUUUUCCGCAUGACGUUGUUGAUGAAAAUUGAUGUAUAUCUAUGUGACUCUUGACCACUGUGUGUAUUAUUUGUUAGCUAGCUAUCUCUAUUUAGCUAGCCCAUUUCUACCAAUUAUAAUCUCUUCAUCUUUCUCUGUCUCCCAAGAAAUUAAUCAUUAACUUUUUGCAAUCUAUCCACACACCAUGCAUGACGUGCGUAAACAAAACCUUUUUUUGGUAAUAGAAUAAAAUUAAACCCCAGACUCUGCAUCGUGAGCGAGUGCAUGAACUAAACUAAAACUUAUAUAUACCUAAUGAUUUUCCAAACAUGCAACAAAUCGAAAAAAAAAAACACAAAAGAGAGAUAGAGAGAGAAAAAGAAAAGGAAAGAGAGGGAAAGGUAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.89%
ME_num:
MEP:
39.84%
HE_num:
HEP:
42.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.73
Avg Expression:
15.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.09741338482662 | 0.00235518188750573 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.5885846787156 | 0.000103349955691488 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.23817745229718 | 0.000669616377436542 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.56972808311299 | 1.80852661722007e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.36521473991318 | 8.87294276071331e-22 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.8575008658793 | 0.0408877196009801 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.2379533739077 | 0.0019663064066223 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.48267301201717 | 0.000205616244357352 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.55106875286587 | 5.48369971633435e-16 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.14380239575291 | 1.85879653377302e-07 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.41012601980596 | 1.95028724407308e-34 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.97521991354473 | 0.00107599856251169 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.82082300353574 | 0.000109219994684577 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.51052023557717 | 0.0015117663229799 |
| 15 | 9311 // leaf // control--/--9311 // leaf // salt | 1.42288880734841 | 9.71521667714535e-07 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.96869540099792 | 1.07384509076221e-14 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.73448960777 | 5.2292462999249e-09 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.38034454356153 | 2.62672373390758e-05 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.38040283489993 | 2.68627176773436e-05 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.38049776689351 | 2.64038704483363e-05 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 6.42604799806708 | 7.7249813808634e-198 |
| 22 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.43578933847871 | 9.27328934632511e-06 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.73983225581011 | 3.36445671022734e-09 |