Chr:
Chr5
Start:
18105570
End:
18106224
Strand:
-
Ref_name:
OSA-LNCN5275
Sequence
(OSA-LNCN5275.1):
ACUGUGCCUCGCUAACGUUGCAUGCAUGGCCCCCAUGUGCGUGUGUUUCUCGAUGACGUGGACAGAUGUGGGCCGUACACGUGUCCCCGCCGGGUGGCCCGGAUCGGCUGCGGAGAGGCGCGGCCCCGAGAGUGACGUGCGCUGGAAAGCGCCAUUUUCUUGGAGGCCGCAGACGAUCCUGUCCACACGUAUUUUGCUCGAGAUUUUGGGGGGUUAUUUUAGAUUUUAAAAUUUAUUUGGCCACUAAAUUCGGAUGGGGCCUUAUCUCUGUACUACGUAUUCGGCAUCAUCCAUCCACUUGAGGAUAUGGUCCAUCCAAAUCAAAAUGCUGGAUCUUCUACACCAAGAAUUUUUUUUAAUUAAAGUUCUCUUAUAUGAUUUACGAAAGCAUAGGCAGAAAGACAGUAUAUAGUCGAUGGACAAGGCGUGCAAACGAGGGUUCUUUGAUUUGCCAAUACAUUGCUAUCAUGUUGUUCGAUCUUUCUGGAUUAGUUUUAAUUGAGUGAAUUGGUUGCUGGAGCAACUCAAUCAGACAAGUUCAAUUGAUUGGGGAUAUUAUCUUACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.89%
ME_num:
MEP:
6.1%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -5.1104622735493 | 0.0103340186278944 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.08472890185754 | 0.0118494094133132 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -5.31812704768563 | 0.00394733562282403 |