Chr:
Chr5
Start:
17846463
End:
17847697
Strand:
-
Ref_name:
OSA-LNCN5271
Sequence
(OSA-LNCN5271.1):
GUGAGUACUAACCUGGGGGUAUUUUUACAAAUAUUUUGUAUGUACUGAAGUAUAGGAUAAACAAUACUUUUAGGGAUGAAAAUGAAAAACUGCUGGAUUCAGAUGCCACGUGCAUGUUCGCAUGUGGCCUUUGGCAGCGGUGCGGUGACUCGCCGUCCAUCUCUCUUCAUGUAAUUCACGCUCCAUGUACUGCACAUGAUUUCGCACAGAGAGAGACAAAGGGCGCCCAGCCUAACCGCUCGGAGCGAGCGCCGGGCGCCUCGAUUUUUCCGCCCUCAUUAUCUCCUCGUUUUUCCCUGAUCUUUUCUCUUCCUCUACUCGUCCUCUCCAUUGCGCAUCUUCCCUUUCCUUCUUUUUCUUCUUCUCUCCUCAGCCGACGACGCCCUCCAUCUCGUCCCUCCCACCCUCCCCCAACCCAUGGUGGCGUCGCUCGCCACGGCGCCCUCCCCCCAGCCGGCAGCGCCCUACCCUUGGCGGCCAGUGCCUCCGCCUCGGCUCCCUCCACCUGGCCGGCGGCGUCUUUCACCCGGUGAGCAGCGGUGCGCGACGGGCCGGGGAGCGGCGGCCAGCGAUCUACUCCUCGGCGUCGGCGGCUCUCUCCUUCCGCGAGCGGCAACAGGCGGCGGCGCCUCUCCGCCCCUCGUCUCGUCUCCCUCGCCAUGAGGCCGCGGGAGGGCUCGACGGUAGUGGGCGGCGGCGCCCUCCCUCCCGGCGGGUGGGGAAUCGGUGGGCAGGGGCGGUGCCCUCCCCUCUGCUGGAUCCAGCGGGAGGGGAGGCGGCGGCGGUCGGGCGUCCCGGAUCCAGCGUGAGGGGAGGGGAUGGGAGGGGAGGCGGUGGCGACCUGGUGGCCCUGCGACGGUGGCAGCGACGGCGGCACCCUGCCCUUCCUGUUAGUGAUUUCUCUAGGAUUUGGGUCCAAAUUUGAUGCGUACUCGGAUUAAGGCGCACGGGGGCAGGCUGUGAAGGCCAGUACUGGUGAGGUUGCCAGCAUGAUUUUUUUUCUUUCUUUCUUUUUUUUUUUUGCCAUCGGAGAAGGGUUGAUAAGGGAUCGAUCACACGCGCGCAUUAGAAGGAUUUUUUAGGCGACGGACGAAACGGACGAUCGGAAACCUUGCGUAUUUUUUAAUUAGGUAUAGAUUAUAAAAUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.37%
ME_num:
MEP:
31.1%
HE_num:
HEP:
45.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.85
Avg Expression:
44.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.11471027144105 | 1.8019522210909e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.56858502603409 | 1.22852889388824e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.94392762583446 | 1.54214271752154e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.33746917580777 | 3.58141464690726e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.16618169120511 | 2.00492032535588e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.16403114989554 | 1.86208053276401e-07 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.20140781413535 | 0.00272562031564215 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.03261329631373 | 0.000105096122777129 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.34104203336376 | 0.0204541724914545 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.36109015672653 | 0.000178697158709254 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.01702726003883 | 0.00178206306388829 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.69013262370159 | 0.00291229492929612 |
| 13 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.58622392347372 | 5.58628740449823e-09 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.22171391342085 | 1.05843886792231e-18 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.12858116083401 | 7.2141395364751e-07 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.22144903715793 | 8.01647704331692e-05 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.05519209746006 | 0.000779657891274811 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.80278864782497 | 5.31850525515836e-08 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.28430075263754 | 0.000980173599903616 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.21521729693684 | 0.00473142456461393 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.42150719797482 | 2.06987214869349e-08 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.18895229713003 | 1.20338533954782e-20 |