OSA-LNCN5256


Function Link


Basic Info

Chr:

Chr5

Start:

17265219

End:

17270380

Strand:

-

Ref_name:

OSA-LNCN5256

Sequence
(OSA-LNCN5256.1):

CCGGCCCAACCUGAGCCGCCUCCUCUCCUCUCAGCUCAGCCGGAAAAGUCUACUUUCCCUCCCUGCGCUACUGUUCAUCUUCCAACUCAGGCAGAGCCCGAGCCAGCCGUGCCGUGCACAGUGCCGCCGCCUCUUCCUUCCAAAUCUCGCCUCCCCGUUGCUCUUUUUCUCCAAUUUUGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAAAAUCGGAGCAAAUCGUUGAGUAUCUUAUCCGAAUCAAACUCGUUUUCGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUCCUCUUCCGUGCUCCGUAGCUCCGUCGCCACCGCCGCCAAGCAAACCGCCGCCGCCGGCCAUCUCCGGUGCCGCCGCGCCGCCGUCUCCAUCGUCGUCGCCGGUCGCCGUCACCACCGUUGGGUGCGCCGUGGUGAGGGGAAGCUCGGCCACCCUUCCUUUUCCGUCGCCGGUCAUCGGAGCUCCGCCGCCCCGUGCAACCCGAGCCGCCGCCGUCGCCUCCUCGUCGCCGGCCGUCGUCGGUCGUCGUUUGGCACGAGGGUGAGUAUCGUUGGGUUCGUCUCGUCGUCCUCUACGUGUUCAUGUCCUCCAAAUCCGCAGCCGGUCGCUCUAUCUCCGGCGAGGUCGCCAUCUUGGUCCGGCCAUUGAUGAUGUCAUCAUGACGUCAUCAUCUUCUCCUUUUCCAGUUUUUUCUAAUAGAUUAAAUCUUCGGAAAUUCAUAACUAAAUCAUCGUAACUCGGUUUUGAGUGGUUCAAGUUGCUAAAUUCAUCUAAAAUCAUGAUCUACAUGUUUGUUUACUUUAUAUGUACUGUUUAUUUGGUUUUUAUUAGUCUUUUUCUUCGUUUUGCGUGUUAGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUACUUAAAGACCGAUUAUUGCAAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUGUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCACAAAUAAGUUCGGAAAUUACUAGUGAAUUUCCGG

Sequence
(OSA-LNCN5256.2):

CCGGCCCAACCUGAGCCGCCUCCUCUCCUCUCAGCUCAGCCGGAAAAGUCUACUUUCCCUCCCUGCGCUACUGUUCAUCUUCCAACUCAGGCAGAGCCCGAGCCAGCCGUGCCGUGCACAGUGCCGCCGCCUCUUCCUUCCAAAUCUCGCCUCCCCGUUGCUCUUUUUCUCCAAUUUUGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAAAAUCGGAGCAAAUCGUUGAGUAUCUUAUCCGAAUCAAACUCGUUUUCGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUCCUCUUCCGUGCUCCGUAGCUCCGUCGCCACCGCCGCCAAGCAAACCGCCGCCGCCGGCCAUCUCCGGUGCCGCCGCGCCGCCGUCUCCAUCGUCGUCGCCGGUCGCCGUCACCACCGUUGGGUGCGCCGUGGUGAGGGGAAGCUCGGCCACCCUUCCUUUUCCGUCGCCGGUCAUCGGAGCUCCGCCGCCCCGUGCAACCCGAGCCGCCGCCGUCGCCUCCUCGUCGCCGGCCGUCGUCGGUCGUCGUUUGGCACGAGGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUACUUAAAGACCGAUUAUUGCAAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUGUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCACAAAUAAGUUCGGAAA

Sequence
(OSA-LNCN5256.3):

UCCAUGCCUUGUUUAUAAGGGGGUGAUUAUGAUCCAGGAAAGGUGCGCUGUAAUGGGUUAUGUUGUGCAAGGGGUAUUGUCACAACUCCUUUCCGAGGUACCGUGGUGGUAUUGAGGCACAUGGUGACAUGAUGUGGGGUUGUGUCUUGUGGGUACAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACCUCUCACAAUAAUUAUGGAUGUUAUACCUGGUAAUAAUUUGCUUAGCUCCUGGUUUGGAGUUAGAUCUGUACAGCCGGGUAUGGUUGUUCAGGAUGGUUGGGCCUGUGCAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAAUUUUUAAUUAAUUACUCUACUGUUUUACUACUCUUAACUCUUUGCUAAAUGCUGCUUUCGCAAAUGAGCCUAUAUUAUGCCAUCCUUUGGUAUCCUUGUGCACUUGCAUAUUUGCUGUGUGGCUUGUUGAGUAUGUCAUAUGCUCAUUCUUGCAAUAAUCAAUCAACCACAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUGUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCACAAAUAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

239

LEP:

48.58%

ME_num:

241

MEP:

48.98%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.89

Avg Expression:

3.15

Tip: OSA-LNCN5256 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNCN5256 is not a differential expression ncRNA.