Chr:
Chr5
Start:
17197463
End:
17198824
Strand:
-
Ref_name:
OSA-LNCN5255
Sequence
(OSA-LNCN5255.1):
UGGUUAAAUAUAUUUUCAAAAGUCAACAUUCUUAUAUAUUAAAAAACGAAAUGAGUACCAGACAGGAAAGAAAUAUCAUGAGUGAAAUAACAAACAGCGAACCCCUGAAAAAAAUAUUAAUAAAGUAAGGAACAAGUGCAAGUGUGUAGAUGAUAGUGGAAAGACAAAACUAUCGAGUCUAAAACUAAUUUAUUUUUUAUAUGUUUUUCAUAAAAUUCGUGAUAGGCUUAACAGGCCAAUGAAUAAACCAGAAAUCAAAUGGGCCUAGAUUAAUCCCCAAGAACUGAGCCGUGAUGCCCAUCAACACAAGGCCGGUUGGGCUAGUUCACGGACAGAGUGACGUGAUAAUUUGGUGUAAGGCCCUUCACAGUCUCCUACGUGGAGGGGGUGCUAUGUCUACGUGGAGGGAAAACAAGGUGGGACCCAUAGCUAUGGUGGGUUCUUCGCUUCUCAACAAAGGAACGAGGUGCUCGGCCAAAAAGCCUGGCGCAGGGCCCACUCGACGACGAAAAAGGAACGACGCAGCUCAUGCGUCGACGGAUGCCGCCGCGAGCAGAUCGGUCGCCGCCACCACCAUCGCUCGGAACCCGACGCCGUCGGGGAGCUCGUAGCUGCGCCGCCGGGGAGAGCCGGAGACUGCCGCCGGGGAGCUCUCGGCCACGCCGUCGGGGAAACCUUAGGGCCCCGUUGCCGCUCCACGUCGCGACGACCCUGACGCUGCUCCCGUUGUCGUCUUCGUCCGACAUCGGUGGUUGAGGGCGCCGCCGCAUGACCGUCUUCCCGCCGCCGCCGUCUUCCAGAUCCGCGCCGCGCUGCUGUCUUCGAGGGCGCCGCCGCACGGCCCGGAGGACGCCGCCGCCCGGCCCGGACGAGCUCGUCGUCGUCUUCGUCCGACAUCGGUGGUCGAGGGCGCCGCCGCACGGCCGUCUUCCCGCCGCCGCCGUAUUUGAGGGCGCGCCGCACAGCCCGGAGGACGCCGCCGCCGCCGCCGGGCCAAGAGGAGAGGAGAGCCGGCGCUGGCGGAGGGAGGAGGGGAGCCGGCGCCGGCGAAGGGAGGAGGGGAUUUGGGGGAGGACAGGACUUGGGAGAGGAGAAAUUUGGGGAUUUGCCGGUUUGGGGAGUAGUUGGGGAUUUGUGGGUCCCACUAGCAGAUAUUUGUGGGUCCCACUCAGUGCUAGCACUGUGAAGAGAGGGUCUUCAUCCUAGCUAUCAUCUUGUGAUAUCUUAUCCCCCAACUAUCAAACGGUGUAAUUUGACUCGCUCAAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
65.45%
HE_num:
HEP:
31.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.76
Avg Expression:
12.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.26400719564385 | 0.00367223168716078 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.20148879480152 | 0.01365114484724 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.03296771758984 | 0.000733505294057265 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.49300456452955 | 1.29049739540587e-09 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.38299878973397 | 2.0281203975973e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.49910701125477 | 1.012814479743e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.6085501322872 | 0.0104582901254077 |
| 8 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.54323370575209 | 0.0041788986379593 |
| 9 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.02179079975756 | 0.0383168806200483 |