RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5225

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

15431963

End:

15452247

Strand:

-

Ref_name:

OSA-LNCN5225

Sequence
(OSA-LNCN5225.1):

GUUCAUCUUCCAGCUCAGGCAGAGCCCGAGCCAGCCGUGCCGUGCACAGUGCCGCCGCCUCCUCCUUCCAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUCUUUACCCCCAAAAAUCGGAGCUAAUCGUUGAGUAUCUUAUCCGAAUCGAACUCGUUUUCGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCUCUCCCGUGGUCUCCCGUGCCCCGUAGCCUCUCCGCCGCCGCCGCCAAGUUCGCCGCCGCCGCCGGCCGAGCUCCAUCCGCGUCGCGCCGCCGACUCCGUCGUCGCCGCCGGUCGCCGUCACCACUGUUAGGUGCGCGGGAGGGUGGAGAAGCCCGACCGCCUGACCCCCGAAGUCGCCGGUCACCGGAGCCCCGUCGCCGCCGUCAACCGAAGCCGCGCCGCCGCUAGACCUCGUCGCCGGCCGUCGUCGUUCGUCGUUUGGUUCGAGGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGCCGGAAGUAUUUAAGAAGAUUAAUUGAAGACCAAUUAUUGCAAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCACUAGACCGUUAUUCCGCUGCUGUUUUUCUUUUCUUUUACGCUGCAGCUUCGGAAGAUCCGCUUUCGUGGAGGUUGAAGCCGACGUUUGGGAAAGCGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

383

LEP:

77.85%

ME_num:

108

MEP:

21.95%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.94

Avg Expression:

1.40

Tip: OSA-LNCN5225 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-4.716563365435560.0384791936836055
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-6.762077162344630.000146995982984583