Chr:
Chr5
Start:
15244409
End:
15245754
Strand:
-
Ref_name:
OSA-LNCN5224
Sequence
(OSA-LNCN5224.1):
CUAGCUUCAUUUCUCAUCCCUUCCUUCUCUCUUCUUCGGUGGUGGCUGGAGGAGGUGGUGGCGCUGCCUCGGGGCCCCUCGCCUGGGAGGUGACAGCGGUAGAUGUGGGUGGUGGUGGGAGGGGAGGAUGCGACGGCGUCAGAGACGGGCGGUGGCGGGAGGGGAGGCGGCUGAGGCCUCGGAUGGGGGAGGCGGUGGCGGCGGUUGCGGCAGCUCGCGCGCGCAUAUCCGGCGGCGACGGCCAUUCGGGCGUGCUGAUCUGGCUACCCCCCUCCCUGGCGCCUGCUUCUUCGCGGCGAUGGUGGUGGCGGCCCGGCGGCAGGAGGUGGUGGCAGUGGCGGCGCCCUCCUCUCAAUUUUUUUUUGACUAGGCCCUCCUCUCAAUUUUGUGAAUGAUUUUUGUGAAAGAUUCAAUGUUAGUGAAAGAUUUUAGUGAUGUUUUUCAAUGUUUGUUGUUCUGUGAUUUGUUUGUUGUUCUGUGAAAGAUUUUAGUGAUUUGUUUGUUGUUAUGUGAUUUGUUUGAUGCGGGGUGGAUGAGCUCGGCUCGAUGCAUCUUCCUCGCGCCACCGCCGGCUCCUCCACCAUCUCUUAGCCUCUAGAACACUCGAUCGGUUCGCCCGAUGUUUUUUUUAGCGGGUGGAGCAGUGGAAGGAAAAGGAUGGCCACGUGGCAUGAUUUUAGGGGAGGUAACUGUUAACGACCAAAUUUGGUAAUAUCAGUAUCGGAGAUGAAGAUGAAAUCGGAGCGGAAUCGAAGAUAAGGGUUUUUCCGGAAACAGAGUAAGAAUCGGCUGGAGUCCAGAUCGGCUACGACUGGGAUCGGCUAAUCUGAGUUGGACUGGUUAAGUGAUACAACCGAUUCCGACAAUACGACCCGUGUGCGACAUUGGGUUCGAGUUGAUGUGCUUCAAGAUGAUUGCCACGCAUGGAUAGAGUCCUGAGAAGGCAAUUGUAUCUAUUAAUUAGGAUAUUUUAUGUAAAGUCCUUAGAGAUAUGUUCGGGCAAAUGUCUGCCGCAAAGACUUAUAGUAUCUUAGAGUUUGUUAGAGAUAAGAGUCGUGUCCAAUAUGGACAUAUCUUGUAUUUCUCGGGUAUAAAUAGACCCCGAGCAUUAUGUAAAAAAGAUUCAACAGACAUUCAAUACAAUUCCGGCGCAUCGCCACCUUUCGCUUUUAUUUCGACGAGUUCUUACUUUCGGGUUGAGCUACAUCGGUUUCGAUCUUCAACAAGAGGUAAAAUUCGUUAUGACGGAUCG
Sequence
(OSA-LNCN5224.2):
CUAGCUUCAUUUCUCAUCCCUUCCUUCUCUCUUCUUCGGUGGUGGCUGGAGGAGGUGGUGGCGCUGCCUCGGGGCCCCUCGCCUGGGAGGUGACAGCGGUAGAUGUGGGUGGUGGUGGGAGGGGAGGAUGCGACGGCGUCAGAGACGGGCGGUGGCGGGAGGGGAGGCGGCUGAGGCCUCGGAUGGGGGAGGCGGUGGCGGCGGUUGCGGCAGCUCGCGCGCGCAUAUCCGGCGGCGACGGCCAUUCGGGCGUGCUGAUCUGGCUACCCCCCUCCCUGGCGCCUGCUUCUUCGCGGCGAUGGUGGUGGCGGCCCGGCGGCAGGAGGUGGUGGUGGCCCGGCGGCGGGACGAGAUGUGGCGGCGACCUCCCUCCAUUGGAUCUGGAGGGAGGGCAUGCGGCGGCAGCCCGGCGGCAGGAGGUGGUGGCAGUGGCGGCGCCCUCCUCUCAAUUUUUUUUUGACUAGGCCCUCCUCUCAAUUUUGUGAAUGAUUUUUGUGAAAGAUUCAAUGUUAGUGAAAGAUUUUAGUGAUGUUUUUCAAUGUUUGUUGUUCUGUGAUUUGUUUGUUGUUCUGUGAAAGAUUUUAGUGAUUUGUUUGUUGUUAUGUGAUUUGUUUGAUGCGGGGUGGAUGAGCUCGGCUCGAUGCAUCUUCCUCGCGCCACCGCCGGCUCCUCCACCAUCUCUUAGCCUCUAGAACACUCGAUCGGUUCGCCCGAUGUUUUUUUUAGCGGGUGGAGCAGUGGAAGGAAAAGGAUGGCCACGUGGCAUGAUUUUAGGGGAGGUAACUGUUAACGACCAAAUUUGGUAAUAUCAGUAUCGGAGAUGAAGAUGAAAUCGGAGCGGAAUCGAAGAUAAGGGUUUUUCCGGAAACAGAGUAAGAAUCGGCUGGAGUCCAGAUCGGCUACGACUGGGAUCGGCUAAUCUGAGUUGGACUGGUUAAGUGAUACAACCGAUUCCGACAAUACGACCCGUGUGCGACAUUGGGUUCGAGUUGAUGUGCUUCAAGAUGAUUGCCACGCAUGGAUAGAGUCCUGAGAAGGCAAUUGUAUCUAUUAAUUAGGAUAUUUUAUGUAAAGUCCUUAGAGAUAUGUUCGGGCAAAUGUCUGCCGCAAAGACUUAUAGUAUCUUAGAGUUUGUUAGAGAUAAGAGUCGUGUCCAAUAUGGACAUAUCUUGUAUUUCUCGGGUAUAAAUAGACCCCGAGCAUUAUGUAAAAAAGAUUCAACAGACAUUCAAUACAAUUCCGGCGCAUCGCCACCUUUCGCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.9%
ME_num:
MEP:
66.06%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.77
Avg Expression:
10.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.69648923388551 | 0.00188396230557401 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.14754241178939 | 0.0226115008906301 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.758518823034 | 2.47135924074126e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.50143200162779 | 0.000134576815029507 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.83877829820545 | 0.000114266128239024 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.58572524934813 | 0.00682272728319156 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.21314753892279 | 0.0100224065309462 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.21381766280205 | 0.00943708247666778 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.70076533066481 | 5.4724504107557e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.39941553958484 | 0.00172185513948756 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.32599268256243 | 0.0442637205470093 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.98731979980606 | 6.58063835259893e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.66824480271506 | 0.0019783440767586 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.07346639814124 | 0.00261111119833678 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.19487877135409 | 0.00345340535378188 |