Chr:
Chr5
Start:
15066132
End:
15067240
Strand:
-
Ref_name:
OSA-LNCN5222
Sequence
(OSA-LNCN5222.1):
CGCCAGUUCCUCCUCCCCUUCUCCCAGCGCCACCGACCACCGCCCCUCGCCAGGAAUGUCACCGCCAACGACAAGGACGAGGCACCGCGGGAGGAUCUCCGGCCCGAAUCUCGCCGUGCGCCCCAACUCUAGGCCAGCGGCAGAUCUGGUCCCGCUGGAUCCGGCCUCCGUAGUCCACAGCCUCGCCGCGGACGGCAUCUCCUCGCCGGAGUCGCUCUCGCUGCUCCCUCACCAGCCGCCACCCUGCAGCGCUUCCCCCCAACAUCGACAGCAACAAAGCUCCCUGAAGUUCAACAUCUGUGUUUUCCCUUUUCUGCUAAGGAAACUUAUCCAAUCAUCUUUUCGAUCAUUUAAGCUUUCCGAUCAUGUAUGGACCAUGUAAAAAUGCAUGGCUACAAAACUGGAGUAGCUCCUUUCUUUAUUAAAUAAAAAAUUGAGCAAACUCUUGUUUUUUUCCCUUUAUGUUAUAGAUAGAAAAAUCUUGUCCAGCAUGUUUUCAGAAUAGAAUGGCACUGAUUUCCCGUUAUGAAAAACUUGAUAAAUCAUGCUGUCUUAAGUAGAAUAUAGUUCACACAAACUUUCAUGAAAUAUAUAGUAGACAUGACCAUAAUUGGCCAGUAGGAGUGAAGUGUCCUGAGCAAAAAAACCAGGAGGGAAAUGAGGGUGGUGUGUUCACCGAGGACGCUGAUAGCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.9%
ME_num:
MEP:
74.19%
HE_num:
HEP:
6.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.66
Avg Expression:
6.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.73017345058361 | 0.0107025553772392 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.7207899485133 | 0.00749759476243607 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.76107438401578 | 0.014031111933757 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.12265030223667 | 0.00249007608251138 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.750283285065 | 0.0424461549155639 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.32842593411389 | 0.0477529604264996 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.73010487850058 | 0.00390369787757133 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.24562859633908 | 8.21910588324321e-05 |