Chr:
Chr5
Start:
14989760
End:
14990700
Strand:
.
Ref_name:
OSA-LNCN5219
Sequence
(OSA-LNCN5219.1):
GUAAAAACUUAUAUAAACAGAUUGAUCCAUAUAAACAUAUAAAACAGAAAUCAAGCAUGAAGGUGUACAAAUCUUGCCGAUACUGACUAAAGCUUCAUAUGCUUAUAUAAAAUGAUAUGUCUAUAUAAGUGGCGAAUAUACAUGAAACAAGAACGAAACAUGCAUAUUAUGUAAGAUCAGCUCAAACCUCGAUACUAUCCUUAUUAUGCCUAAUUGCAGGCUAGUUUGCAUGGUUCUAAGCACAACUAGGGAUGAUACAUCUCAAAGUAUGAAGAGAAACAAUGCAGUCUAAAUAAUCAAGCAAUUAUACAUUUUUCAGGAUGGUAGAUGCCUUAGAUAAUAUAAUCUAGCAGGACAAUUUAACCGAAAGCAAGCUCCCCGUACACCACCUCCCCUUCCCACCAGCAUCCCUCUCCCCUCCUCUUCUUCACCACUCAACAGUGACAACUAGAUCCACAAGACGGUGACCACGAGCUAUAGAUAGGCCGAGGGCUCAAGGCGGCCGCCGCCGAGCUGUUGCGGCGGAUGGGUAGUGGACACCGCCACCCCGUCAAGCUCGCGCCCCUCUUUGUCCGUAGCUAUCGCCGUCGCCGGCACAACCCAAGAGCUCCACAAGCACGGCGCCUGGUCACCCUCCCAUGGCCGACGAGUUCUUCUCCCUCUCCCUUCUCUAGCGGCACAGGGCACGAGCGUGGGCCAGUCCUUUAAAAUUUGACAAAGAACUUGUGGUUUAACUUGGCUCCACGAUCUUCAUGGGGACAACAAGAACAGCAGACAUGGCAUGGAAUGUCCGACCCGGCUUUGUUAAGGCUGAACUUACAUCUCUGCCCACUGUAAAAGCCCUUAGGAGGACAUCAAGGAGGCAAAGGCCAUCUGAUUCCGAAGUUUAAAUUUUAUAGUACCAGUUUUCUACUCCAAUGAUUUCUCAACUGUUGGUUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.24%
ME_num:
MEP:
8.33%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.60749587940933 | 0.0190574005626176 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.23007569955747 | 0.0451884521937416 |
| 3 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 2.93493634153804 | 0.0425278105684197 |
| 4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.80085229682195 | 0.000147899707337419 |