Chr:
Chr5
Start:
14801661
End:
14809961
Strand:
+
Ref_name:
OSA-LNCN5217
Sequence
(OSA-LNCN5217.1):
GCCGGGUAGGGGGUGUCUAGUAGGUGUUGUUGGUGUCUUCUGGCAAGCUAGUAUGGCCUAUGUUACCUUGAUACAGUGCACAGCUCACGUAUCCAUAUCAGAUACAGUACGUCCUCGGAUACGGAUACGUAUCGAUACGCUCUGAUACGUAUCCCUCGUUAACCAGGUUUCCAAAUAAAAAUAAUAAUUAUGGAUAUGCUGCCGAUACGUUUCGAUGCAUCGCCACUAGCCGCCGUCCCGGCCCGACACGGCGACGCCCAUCUCAUGGAGCGUGGCGACAAGACAACGAGUGCAGGCGGCAGGCUGCGCAGCGCCUCCACCGUUCGCGGCCGUCGCAGUGCCUUUGACUUCCGUUGUGGUGCCUCCGCGGCUCCGCCGUCCACCGGGUGUCAUGGCGCUGCCGUACGCCGAAGGGCCACCGUCGUCUGCCUCCCGUCGUGGUGCCGCCAUCUGACGCAGCCCCUUCACCGGCAGCCGGGCGCCAGAGCUCCGCAACCAGGCAAGCGCAGCCGCACAUCCCUCACUGCCUAGUACUUUUCGUUCUUCUACUCCGCUCCACUCUCUUUCCAAUCCAGGCUUAUCUAAAAUUUGUUCCCCUUUGUUAUUUUCUUGGUACAAGACUACUAGUGCCAUAUCUUGUUAGAUGCGAUGUAUUUUGAUGGAUGCUUGAGUGGUAAUGCAUCUAGAUAUCCAGCAACUAGCAGUUCUAAUGGUUGUAUGGCUGCUAAUGCGGCUGGGCAUUGGAGGAGAUAGCUUUGAGUUGUUUCAUGGUUAUGUUGGACGACUGAUUUUCUUAAGCAAACUGACCUUGAGAGAGUCCAGAAUAUGUUGGUGUAUUGGACCCACUAUUUUUACACUUAUUUAAUUUGCUAUA
Sequence
(OSA-LNCN5217.2):
GAUACAGUACGUCCUCGGAUACGGAUACGUAUCGAUACGCUCUGAUACGUAUCCCUCGUUAACCAGGUUUCCAAAUAAAAAUAAUAAUUAUGGAUAUGCUGCCGAUACGUUUCGAUGCAUCGCCACUAGCCGCCGUCCCGGCCCGACACGGCGACGCCCAUCUCAUGGAGCGCGGCGACAAGACAACGAGUGCAGGCGGCAGGCUGCGCAGCGCCUCCACCGUUCGCGGCCGUCGCAGUGCCUUUGACUUCCGUUGUGGUGCCUCCGCGGCUCCGCCGUCCACCGGGUGUCAUGGCGCUGCCGUACGCCGAAGGGCCACCGUCGUCUGCCUCCCGUCGUGGUGCCGCCAUCUGACGCAGCCCCUUCACCGGCAGCCGGGCGCCAGAGCUCCGCAACCAGGCAAGCGCAGCCGCACAUCCCUCACUGCCUAGUACUUUUCGUUCUUCUACUCCGCUCCACUCUCUUUCCAAUCCAGGCUUAUCUAAAAUUUGUUCCCCUUUGUUAUUUUCUUGGUACAAGACUACUAGUGCCAUAUCUUGUUAGAUGCGAUGUAUUUUGAUGGAUGCUUGAGUGGUAAUGCAUCUAGAUAUCCAGCAACUAGCAGUUCUAAUGGUUGUAUGGCUGCUAAUGCGGCUGGGCAUUGGAGGAGAUAGCUUUGAGUUGUUUCAUGGUUAUGUUGGACGACUGAUUUUCUUAAGCAAACUGACCUUGAGAGAGUCCAGAAUAUGUUGGUGUAUUGGACCCACUAUUUUUACACUUAUUUAAUUUGCUAUA
Sequence
(OSA-LNCN5217.3):
GCUGCCGAUACGUUUCGAUGCAUCGCCACUAGCCGCCGUCCCGGCCCGACACGGCGACGCCCAUCUCAUGGAGCGUGGCGACAAGACAACGAGUGCAGGCGGCAGGCUGCGCAGCGCCUCCACCGUUCGCGGCCGUCGCAGUGCCUUUGACUUCCGUUGUGGUGCCUUUGACACGGCGACGCCCAUCUCAUGGAGCGCGGCGACAAGACAACGAGUGCAGGCGGCAGGCUGCGCAGCGCCUCCACCGUUCGCGGCCGUCGCAGUGCCUUUGACUUCCGUUGUGGUGCCUCCGCGGCUCCGCCGUCCACCGGGUGUCAUGGCGCUGCCGUACGCCGAAGGGCCACCGUCGUCUGCCUCCCGUCGUGGUGCCGCCAUCUGACGCAGCCCCUUCACCGGCAGCCGGGCGCCAGAGCUCCGCAACCAGGCAAGCGCAGCCGCACAUCCCUCACUGCCUAGUACUUUUCGUUCUUCUACUCCGCUCCACUCUCUUUCCAAUCCAGGCUUAUCUAAAAUUUGUUCCCCUUUGUUAUUUUCUUGGUACAAGACUACUAGUGCCAUAUCUUGUUAGAUGCGAUGUAUUUUGAUGGAUGCUUGAGUGGUAAUGCAUCUAGAUAUCCAGCAACUAGCAGUUCUAAUGGUUGUAUGGCUGCUAAUGCGGCUGGGCAUUGGAGGAGAUAGCUUUGAGUUGUUUCAUGGUUAUGUUGGACGACUGAUUUUCUUAAGCAAACUGACCUUGAGAGAGUCCAGAAUAUGUUGGUGUAUUGGACCCACUAUUUUUACACUUAUUUAAUUUGCUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.45%
ME_num:
MEP:
5.69%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.91
Avg Expression:
2.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.36826492855328 | 0.00117761724582756 |