Chr:
Chr5
Start:
14725955
End:
14726540
Strand:
+
Ref_name:
OSA-LNCN5212
Sequence
(OSA-LNCN5212.1):
CGGCAGGCCAGGCGACGUCAAGUAGACCGAUCGACGCGCAGGCCGCGCGCGAAGAUCGUAUAUACCUUCGUUCGCCCCCGUACUGCAACUCCAAUAUGUACGCCUGCAGCCGAAGAGCUAUAGCGCGCUCGGCAGUUUAUGCAUGAUGAGAAGAAAAAGGGUCUUAGUUCAUCACGGUGAAAAAAAACCUUGAGAAAAUUAAGUUCAGUAAUGGCCACAAAUGGACUUUUCCCAAUAAGCAUAUAUGCGCUUCUAGAUGAUUUUUUUUUGAAAUGUUUAGAUUAAUUUUACUACCACUAGCAAAAUACCCAUGUACUAUAUAUUCAACUACUAUGUAGGUCCUUCGGUUCGUCGCACAAAUCGAGGCCGGUCAAAUUAAUGCGCACGCUAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.93%
ME_num:
MEP:
14.84%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.92
Avg Expression:
1.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.56119059334838 | 0.0439876431148449 |
| 2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -6.57638983505347 | 0.00131892015786486 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -6.57647716755647 | 0.00133395568488685 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -6.5765893562822 | 0.00132234459447633 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -7.29438126921698 | 2.68039542899656e-05 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.07397958308816 | 0.00710253697826632 |