RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5200

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

13925118

End:

13933055

Strand:

-

Ref_name:

OSA-LNCN5200

Sequence
(OSA-LNCN5200.1):

CUCGGAUUCGAGUGGUUCAAGUUGCUAAUUUUUUCUAAAAUCAAGAUCUACAUGUUAAAAAUAUCCACAUGUACUGUUUAUGCUUGUUUUUGUACUGUUUUGUUGAUUUUGUUCAUUUGCUUUAGUUUCCGACAUUCCGGAGGAGAGCGUUUUCGUUGAGGAAGGUUCAGGAGUGUUUGAAAAAGCUCAAGUUGAAGAGAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGGAUUUAUAUAUUAAAUUGUCAGUUUGUGUAUCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCAUAAAUUAGUUCGGAAAUUACUAGUGAAUUUCCGGUCGUGACACUAGUGGAAUAGGAAUAUAGUAGAAAUCAGGAGUCCGGAAGCCUUCGGAAGAGUUCGGGUAUGGCUCUAGUACUUUUCCUUUCCUCUUUUGUAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

23

LEP:

4.67%

ME_num:

438

MEP:

89.02%

HE_num:

30

HEP:

6.1%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.68

Avg Expression:

7.44

Tip: OSA-LNCN5200 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-2.65673459709350.0149522501064621