Chr:
Chr5
Start:
13366620
End:
13367935
Strand:
.
Ref_name:
OSA-LNCN5181
Sequence
(OSA-LNCN5181.1):
CAGAUUAAGAGGACCGCUAGCAAAAAUAUACCUAUUUUCGCUAGCGGCUCACUUAAACAACCGCUUGCGAAAAUAGGAUUUUCGUUGGCGGUUAUUUUCAAAGGCGGCCGAUAAGAGGACCGCCAGGAAAACUAAAUUCCCCAUAUUAAAACCGUCCAAACUCGCAACCUAGCUAGUCCUCUCCUUUUCUUCCUCCCUCUCCCUCUGUCUUCUUUUUUUUUUUUUUGCGCAGCUAAGUCCUCUUCAUCUUCCUCCUCCCUCUCAGUCGCCGGCGCGCCCCGUCUCCUCCUUCCUCCCUCUCCCUCAGUCACCGAAUCCGCCACAGGUGACCACGAGCACGAGCGCGGGCGGAGGAGCUCGGGCGUGGGCGGGGAGGGCGGAUCUGCCACCGUCGAGCCGCGGGGAGGGCAGAUCCGCCGCUGCCGGGCCGCGGGAAGGGCGCCUCCAACCUCGUCUUUCGGGCCGCGCCAUCCACCACCACCGGUACGUCCGUCUCCUCCUCCUUCCUCCCUCUCGGCCUCUCCCUCAGCCGCCGAAUCCGCCACGGGUGGCCACGAGCUCGGACGCGGGUGAGGAGGGCGGAUCCGCCGCCGCCGUGCCAUGGGGAGGGCGGAUCCAUCACCGUUGGGCCGCGGGGAGGGCGGAUCUGCCGCCGCCGCAGGGAGGGCGCCUCCACCGCCGCCUCCAACCUCGUCUUCUGGGCCGCACCACCACCACCCGCCGUCGCGUGCCCGCCUCCGCCGUGCGGUUCGACCGGCCCUCCGCGGUGCUCCUGCUCCUGUCCGCGGCGGAGACGGGCUUGUGCAGGCCAGGGCGGUCGCCGCCGCCGAGGCAUCCUGAGGCAUGAAUCCUAGAGAGAGAGAACACUGCUGCUGCAUGCAUGGAUGGUUUCAGUGAAGAGCUUAACUAGAUGUGAUUAUCUGCUGAUGACUUUGUGGGUGUAAAUCAGAUUAUGUGUUGUUAAUCUGUUUAUGUGUUGUUGAUGAUGCCAAUGUUGAUUCUCUGUAUUUGGAUUGAUGCCAAUAUUAUGUAUUAAUUUUGAAUUUGGGGUAGGGGGUUUUUGGCGGGCUGGGUUGAUUUUCACUAACGCUUAUCUUUAAGCAACCGCCAGGGAAAAUGAGUUUUCGCAAGCAGACGUCAACCGCUAGAAAAAAAUCAUUUGUCCGCUUACAAAAAUCGAUUUUCGCAAGCGGACCGAAACCGCUAGCGAAUAUCGUGUGUCCGCUUGCAAAAAUCUAACCGCCAGCGAAAAUCUUAUAUCUUCACUGGCCUUUACUUUAUGGCGGCUUCAAAUUUCGUCAGUGAAAACCUAAAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
36.18%
HE_num:
HEP:
63.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.62
Avg Expression:
23.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.75663887139817 | 4.29116883707666e-09 |