Chr:
Chr5
Start:
13055639
End:
13078155
Strand:
-
Ref_name:
OSA-LNCN5179
Sequence
(OSA-LNCN5179.1):
GCGAGCUGGAUUUCUCAAAUCGUUAACAAAUGAUGUCCAUUGGUUACCGAAGGGAGUGAGUUAGUGCAUGGCUGCACUACUUCUUGGCCCCCUCCUAACCCUAACCUGCUAAGACAAGUCUGAAUAUAUAGCUUCAGUUAGGUAGUACAUAAAUAGGCACCAUUGCAAGCCUGAUGCUGCUACACCGUCCAAGUCACCAAACUGAAGAUAAGCUGAAGAUGUCGAGUAGCUGUAUUAGCAGCUUUUGUAACAAGACCAUCUUCAUGAGGAUACUUGUCGUUAUAGCUUUGCUUCUACUGGCCCUUGGAGUUCUUCCCUUUGCACCACAUUCACACAGUGAAACUUCGAACACCAGUCGAAAAUCUCGGUACAUUCUUAUAAGUGGUUGCAACAACUACUGCAGUGUGGCAUGCUGCUAUUGCAACAUUCACAGGUUCCCUCCAGUUUGUGAGAAGUGCUGCAAAUAAUUCAUUGAAGUCCAUGACACAUAUCUUGUUUAAGGAACAAUGCACAGGCAUUCUUUUUCUGUGCAAUCCCACCUUCGUUUUCUUAUUGUCUGAAUUGUCUUUGUUCCUGCUGUUAUCUUCGCUAUGUUGAAGCAACAGAUAUAAACCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.67%
ME_num:
MEP:
44.11%
HE_num:
HEP:
51.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.88
Avg Expression:
79.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.30149760888159 | 2.10348404033297e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.39217040326578 | 6.33951332354234e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.00864813886855 | 5.87048833582292e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.27321150598983 | 0.000493476406565677 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.212505319855 | 0.000439931979438179 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.70230543760119 | 0.00251358468249135 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.19137595894504 | 0.0274155301889309 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.90679765004854 | 0.000245796128126026 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.821569691267 | 0.000147607147953127 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.28248838082563 | 0.000973671913560402 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.31438143034116 | 2.36973457889103e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.71648765229765 | 0.000208162761404733 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.84716383697205 | 5.9024944380304e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.51403774060884 | 0.00237558347317971 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.33796313345338 | 0.00144991250209724 |