RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5157

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

12241120

End:

12254011

Strand:

-

Ref_name:

OSA-LNCN5157

Sequence
(OSA-LNCN5157.1):

CCCCUGCACUCCCUCUGCAAUCCCUGCGCAAAGCCGACGCCUGCUGCCCGCCGUGUUCCCCGCCGACCACCGCCUGCGCGCGCGAGAGACGCCGAACGCGUCACGACAACCUCCGCGUCCGCCUCUCGCUCCUCCCUCGCCUAUAAAUCGAACCCUCGCGCUAGCUAACUCUCCAGACCACCUUCAACCUCCACUCCUAAAGCGGAAGCCCUAAACCCUCUGAUUCACCGGGAACGGCCGCGCCACCGUCGCGCCCCGCGCCGGCCAAACAGAACGCCGCCGCUGAGCCCACACCAUCGAGCCGUCGCCUCGAUUCCGACGUUCUUGGAGAGUCCGAUUUUGCAGGAAAAGACUUUGAAGAGUUCCAAGGCUAGCAAGGAGGAGUUCUACAGUGAUGCUGAAGGUGUCGCCUGCGCUCUUUAUUUUAUUUUCCGCUGCUUAGAUCUUUAUUGUUUGAGAGGAACUAUCUACCUCUGUAAUGACUGUAUAUUCGCUUAUCAAUUAGAGUAAUAAUUGCAGUCUAUUAUCAAUUUGUUAUUGUGUGCCUCAGCUGAUUCCUGGACGAGGGUUUACACACAUGUAAGCGUUCGGACGUGACAAGUUUGUAUCAUAGCCUCCUUGACCCUAGGUUAUGCCAAAUGGUUACCUAUAGAAGCCCUCUAAAAAUGUUGAAAAAGUAGAAUUGUUCUCCUCUCUUUCUCUUUUAAUUAAACCAAGCUAAUGGCACAUGCAG

Sequence
(OSA-LNCN5157.2):

CCCCUGCACUCCCUCUGCAAUCCCUGCGCAAAGCCGACGCCUGCUGCCCGCCGUGUUCCCCGCCGACCACCGCCUGCGCGCGCGAGAGACGCCGAACGCGUCACGACAACCUCCGCGUCCGCCUCUCGCUCCUCCCUCGCCUAUAAAUCGAACCCUCGCGCUAGCUAACUCUCCAGACCACCUUCAACCUCCACUCCUAAAGCGGAAGCCCUAAACCCUCUGAUUCACCGGGAACGGCCGCGCCACCGUCGCGCCCCGCGCCGGCCAAACAGAACGCCGCCGCUGAGCCCACACCAUCGAGCCGUCGCCUCGAGGACGAAUCGAUUGUUGCCGUUGGCGAGAGUGUGCAGGACCAAGAGUUAUUUGAGGAACCAACUGAGCAAGAUUCCGACGUUCUUGGAGAGUCCGAUUUUGCAGGAAAAGACUUUGAAGAGUUCCAAGGCUAGCAAGGAGGAGUUCUACAGUGAUGCUGAAGGUGUCGCCUGCGCUCUUUAUUUUAUUUUCCGCUGCUUAGAUCUUUAUUGUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

450

LEP:

91.46%

ME_num:

38

MEP:

7.72%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.90

Avg Expression:

1.21

Tip: OSA-LNCN5157 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-4.876961037924780.0026041803166624
2Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift1.689138817351930.000666169533659472