Chr:
Chr5
Start:
11650378
End:
11652042
Strand:
+
Ref_name:
OSA-LNCN5149
Sequence
(OSA-LNCN5149.1):
UGAGUCUUAAGGAGUUGAGACGACGAGGUGUCCACCAUGCACAUGGAGGAUGAUAACAAGGACCAAGAAUUAUUUGCUAGACAUGUGGAGGAGAAUGGUGGCUGCAUGCCAGGAGGAUAACUGCAAGGUCACAGGGUGCAUGCAUAGGAGUCUUGCCUGCAUGCACUGGAAGGACAAUAAUAGCGAGGUCUGGCCAUUAAUUCAUGUUCUGUGCAGAGGAACAAGCUGUCAUGGCAUCACGCCAUGCUCGGAGGGAGAGGAUAUAAUCUCUUGUUAUGAAAAAACUCAAUACUCCACCUCGAGAUGGGAUUGUGGGAAACACCGCCUCCUCCAAUGUUUACUACUGCAGCGCUGGCCAUUCUAGGGCAAGAGGGAGGAGAUAGACUCAUCCAUGUGAGUGGCAAGCUUGUAGCCAGAAAUCAAUCAUUGGAAGCCAUGAGCUAUUGGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.09%
ME_num:
MEP:
30.28%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.76
Avg Expression:
1.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.41939339842418 | 0.025151471975064 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.23301420827475 | 0.0250361131688735 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.70254621345578 | 0.0308344018362103 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.77944864305355 | 0.0314606806754975 |