Chr:
Chr5
Start:
9780155
End:
9780850
Strand:
.
Ref_name:
OSA-LNCN5119
Sequence
(OSA-LNCN5119.1):
CCCGACUCGGGAGUUGCUGCGCCUGACGCCACAUGGUCUUCUCUUCUCUUCUCCCAGCGCACCUCGCAGGAGAACUCAUGAACGACGAGAAAACAGGGAGAGUGAGCUAGGGUCUGGAUUCGGCUGCCCCAAGCCUGGGAGGUGCAAGAUCUGGAAGUGCUGCCCACCAAGGCGCUAGAUCCGGCCUCCCAAGGAAACAGCCUCACGCCCUCACCAUCCCCACCCCCUCCUUGACCCAGCGACAGGAGUUCGACCCGCCGUCGGCACCCUCGCCGCACAACGCAUCUUCCUCGCUAGCGAUUCGAAACCAUCUGUGUUGAUUUUUUUUCCUCGGCUCGUCCAUGGCAGAACCAUUUGCCCUGAUCUUUUUUCCUCUCAUCCUUUUCAAUCACAGUAUGCUCUCACUAUCGUAGAUGGAUGAAGCUAAUCUAUUGGUUCUAUUCAGACAUGGAUUCAAAACAUUGAUCUCCAAUUUGUACGACAUAUAGCUCCAAAUUUUUGUCCCCAAAACUUGAAAAUCGGCGGCGUGUGAUUCAUAUGUUUUUCGGUCUAUGUAGGGAUUAAUUACAUAUGCAUGCUAGAUUUAAAUAGGUUAGCGAACCAAGUCAAAUCAAGUUUAUAUUGGUUUAUCUGAUGAUACAUGUGAUUUACGGCCUCCGGAUCCCUCGAUGCAUCGGCACCGCUCAGACUAAUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.47%
ME_num:
MEP:
19.51%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
1.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.13597179883187 | 0.0439304839615817 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.19959016172638 | 0.049240969633754 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.78691172966504 | 0.00433335099493934 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.55077229430318 | 0.0115142060556571 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.26996945704439 | 0.0187094873522269 |