RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5104

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

8398001

End:

8424197

Strand:

-

Ref_name:

OSA-LNCN5104

Sequence
(OSA-LNCN5104.1):

GAGUAAUUAAUCAGAAAUUUUAAUCAACACUGAACAGCACACCCAUGCUGUACAGGCCCAACCAUCCUGAACAACCAUACCCGGCUGAACAGAUCUAACUCCAAACCAGGAGCUAAGCAAAUUAUUACCAGUUAUAAUCAUCAAUAAUUAUUGUGAGAGGUGUGAGACUAAUCACGAAAAACAUUGCUCAACUCGCCCAUAACCGCGGGCACGACUAUUCGAAUAGUUUUACUCUGGCCAGAGGUGUACCACUGUACCCACAAGACACGAUUCCGCACAUGUCGCCAUGCCCCGAAAUACCACCACGGCAUUGCAAAGGGGGAAAUCGUGACAAUACCCUUUGCACAACACAACUCAAAACAGUGCACCGUUCCCGGAUCAUAGUCACCCCCUUAUAAACAAGGCUUGGACUCCCCAGCGACCCCCGUGGACUUCUCGCCACUUCUCAGUCUGGCGCACUAUAAUGAAUCACGCUAUACAAAAGAUAAAGCCGUUGCCCACGCUGGCUUGUGGUUGGCACGAUAAAUGUUUCACAACAGUAGCUCGCGAACCGGUCCUUAAUUGCCAUGAGCACGACCUUCAAAACCAUGUGCUCACAACCCACCAUUAAUCAUAUUUUAAUUACCAAUUAAUUAUCAUAACACGAUUAACCAUCGUGAGCUACCAUUAAAUAUAACCAUAAAUAAUAAUGUAGUAUAUAUGAUUCAUCCCAUUAGUGAGCUAAUGUUUCUAAGCAUUGCUAAGCAAUUAUAUAUAUAUAACAUUUAGCUGAACCAAACCAAUACAUAAGGUUCAAGCUAAUCAAUUUAUUACCCGAGGUAUCAAGGAAUAGGGCAUUCAAUGCAAAUUGACCAUAACAAAGGAAUAGGUUCACACCACCCGGUGACAUUCGAAAAUAAAUACACAGUUGAAAUAAAUAGAGAAUUUGAAUAUAGGAUCAACAUGCUCAAAGGAUUGUGUUUGGGAUCUCCUUGCAAUAAUCGGUCUUCAAUUAGUCUUCUGAACAACUUCCGACGCACUCACGAUCCUUCGCAAUGACAGAAACGACAAGCUAACACGCCAAACCGAGAAAAAGACUAAUAAAAACAAAAUAUACAGCACAUAAAAAUAAACAAACAUGGAGAUCAUGAUUUUAGAUGAAUUAGAGACUUGAAUGGCCUCAUGUGAAUUAGUUAUGAAUUUUACAAGAUUAAACUGAUUUUAGCCUUAUACAGAAAAGGAUUCACGAUUUAUUUUAGAAAAGAAAAGGGCUUUAUGACAUCAUUGAUGACGUCAUCACCGGCGGGAGGCUCGGGUUCCAACGUUUGCCGGCAACCUAGGGCACGACGUCGCGAACCGAAGGCACCGGAAGAAAGAGCACGACGAGGAGAACUCACUGAGGGGCGGCACGACGACGACCGACGACGGGAGACAGCCGGCGACGAACUCCGAAGGGCGGUGAGGUACUGGUCGACGAUGACAGCGGCGUUCCGGCAAUCUUUAGCGGAGGAAAACCAGUGGACGGGCUUCACCUUGGCUCUGCGAUGCCGAAGAAAGCGACGACGACGUCCAGAAACCACGGAGUCGACGGCGAGGCUCGGCCGGAGGUGGAGUAGAUCGGAUUCACGCCGUCGAGGGGCUUCCAGCGGGUUACGGCGAAAAGGAACUAGUGGCCGGGCUUCUUCUCCUCCUUGCGAACCCGGUGGUGAUGACGGCGACCGGAGGCGACGGCUACACCGGAUGCUAGGGACGGCUGGAGCGGCUGCCGGCGGCGGAGAGAGAAGGCGGCUGCGGGGAGAGACGGCUAGGGAACGGGAGCUCGAGCUAGGGGUUGGAAACGAAAGAGGAGGUCUUGGGGGUUCUAUUUAUAGCCAAAGCUGGAGGAGAUCGGCUCGGACCCGAGAGGAUUUGGCGGCGGAUUGGUUAAGGUUCGCCGGUUCGGGGAUAAGGUUUAUCCGACCGAUUUGAACUCGAAUCAAAGGGAUAAAAUCCGAUUCCUUAGAAGAAACGGAAGAGAAGAAAAAGGGAAACAAAUCCCCUCAACUAAUUCUGGAAAAGAUCGAAAGGGGAGGCCGGAUUUGGAGGGAAAAGCGGCGGCUGCACAGGCACAGGACGGCUGGGUCGGGCUCUGUCUGGAGCUGGAAGAUGAUACUGUAGCGCGGGGGAAGCAAAACAGAUUUUUUGCUGGGCUAAAAACAAAAGAAGGGAGGGAUAAGAAAUAGACUUCCCCGGAAGACAAAGAGAC

Sequence
(OSA-LNCN5104.2):

GAGUAAUUAAUCAGAAAUUUUAAUCAACACUGAACAGCACACCCAUGCUGUACAGGCCCAACCAUCCUGAACAACCAUACCCGGCUGAACAGAUCUAACUCCAAACCAGGAGCUAAGCAAAUUAUUACCAGUUAUAAUCAUCAAUAAUUAUUGUGAGAGGUGUGAGACUAAUCACGAAAAACAUUGCUCAACUCGCCCAUAACCGCGGGCACGACUAUUCGAAUAGUUUUACUCUGGCCAGAGGUGUACCACUGUACCCACAAGACACAACCCCACAUCAUGUCACCAUGUGCCUCAAUACCACCACGGUACCUCGGAAAGGAGUUGUGACAAUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

321

LEP:

65.24%

ME_num:

169

MEP:

34.35%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.90

Avg Expression:

2.06

Tip: OSA-LNCN5104 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day3.610405472803850.0448635875513643
2Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day4.343173148788870.00806592295531639