Chr:
Chr5
Start:
7963959
End:
7964535
Strand:
+
Ref_name:
OSA-LNCN5084
Sequence
(OSA-LNCN5084.1):
ACAACAUGCUUGAGACUAAGAUUUCAAAAGAAAAGAAAAAGGCUUGUCAACACCAGAAAAUGAUGCCUAAAAACAAUGAAGUUCCCAUCUCUAGAAAGAAAUAUAAGAAACAAUGGCAUGUAUAAUGAAACAACCAGUAAAUGCACAUGCGGAACUUGCUAUCACUUCGGUUUUAUCAAUACCAUGCCUACUACCCAAGUCUGAAGUCUGAACCCAGUGUAUGAAUGUAGCAAAAAUCAGGAUACAACCAUAAUAGCUACAUUUAACAUGUUCUCCGUAAGUCAGGAUACCACUGUAUAAGAUAUGGAACUAAGCAAAUAGUUUACAAACAAAAAGUGCAUUUAACAUGUUCUCAUAUUUCGAGGUAGUAGUGCAUGUUUUUCCUUAUCUCACUUAAGCAAGGAUCAGAUUAGAAAGCAUCAGGGCAAACAGAAGCCAUGAGUGUCACGAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.77%
ME_num:
MEP:
71.54%
HE_num:
HEP:
17.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.74
Avg Expression:
9.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.41858964482746 | 3.97836695551948e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.52334733784511 | 1.16437564960318e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.50474652612434 | 1.58297937447812e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.00063119414902 | 0.00356330904197404 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.80562561970214 | 3.84138123054383e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.12340542203062 | 5.22132092940584e-05 |