Chr:
Chr5
Start:
7850208
End:
7850684
Strand:
+
Ref_name:
OSA-LNCN5081
Sequence
(OSA-LNCN5081.1):
CGGACGCCUGCUCCAGCCCCUCCGUGUCGAGAUUCUCUGUGGGGCGGUGGUUCAUCGGGCUGGUGCUGCUGCUGCGGCCAGGCGAGGAGGGUCGCCGCCGCGCAUGGGAGGUCGGGGAAGGGAGGCCGCCGCUGGUGCCGAGCCCGCCGCUUCCGCGCCGGAUGGGAGGUCGGGGAAGGGAGGCCGCCGCCGCCGGUGCCGAGCCCGCCGCUCCCGCUCGCCGCGCCGCGCAUCUCCCGUGCUCGCCGUCGGUGAGAGAAGAAGGAAAGGAGGAAAGAGUAAGAGGCUGAAAGGAGGAUAAGGAUGGUGGAAGUUAAA
Sequence
(OSA-LNCN5081.2):
CUGCCCGCCGCCAUCGGGGAAGGGAGGCCGCCGCUGGUGCCGAGCCCGCCGCUUCCGCGCCGGAUGGGAGGUCGGGGAAGGGAGGCCGCCGCCGCCGGUGCCGAGCCCGCCGCUCCCGCUCGCCGCGCCGCGCAUCUCCCGUGCUCGCCGUCGGUGAGAGAAGAAGGAAAGGAGGAAAGAGUAAGAGGCUGAAAGGAGGAUAAGGAUGGUGGAAGUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.54%
ME_num:
MEP:
10.98%
HE_num:
HEP:
80.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.75
Avg Expression:
48.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.44072017314895 | 0.00913989058242313 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.44196583878627 | 4.24485855039912e-07 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.05709498937497 | 0.0115297398911158 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.22044519222065 | 3.24939666143544e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.16447692411123 | 2.59236348550117e-07 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.08610605763414 | 0.00527641407818714 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.87193296401335 | 6.91707158083142e-17 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.05346300787817 | 0.00429505801783642 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.13659256976794 | 0.00240503553783997 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.11245056805096 | 0.00041251956780365 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.17819712526245 | 0.00176175635256144 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.17827572983515 | 0.00182509957929692 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.17838552419364 | 0.0017689058956917 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.01733400729523 | 0.00389774374600908 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.05977963501062 | 0.0422163143413145 |