Chr:
Chr5
Start:
7757840
End:
7758832
Strand:
+
Ref_name:
OSA-LNCN5074
Sequence
(OSA-LNCN5074.1):
AAGUUCUUGCACCAGAACUAUUAAUUUUAAAUAAUAAGUAGUAUUUAAAUGUAUGUUAAGUUGGUACAUAGACCACAUUAUGAUUUUUUUUUAAAAAAAAGAACAUAGUACAAACAUAGGCGUUCAAACGUGCAUGCACCCCCUACUCCUAUGAGCACUUCUGAAAGACUGAGCCGAUAUAUCUUGAGAUUGACAAAGUCAUCACGGAUGUCUUGCUUUUCACAAGUAUGUCGCGUACCAGCAAAAGAAUAAUUAGCCGUGUGCACAUGUGGUGGGUUAGUUACACCGCAAGAAACCUAAUCAGUUGUUUCUAAAAAGAAAGAAAUAUAAUCAAAUGAGUUACGCUCACUUCGCACAUUAUGUUACAUUUGUACUCAAAAGUAUAGGGAGUAUAUAUUAUCAAUAGGUUAAUUAAAUUAUGUACCAGAAUCAUUUAGUCUAUUAUUUUUUAAAAAAAACAAAUCCUCCCUACAUAGUGCCCAAAAUUAAAUGCCCGAAAAUGAGAUAUACAUACACAUAGGCAUCAAGCUAUAAAAAUGGCACGUUUUUCCUGCGAGGUGUUUCAGGGAUUUAUUAAUAUCAUAUUGGUGACAGUUUAGCAGACGGUACUGAAUAAUCUCCCCAUUAAUCCCCCGAUGCCCCCACACGUCACUGGUCGGUUACUAGGUGUCGCCACAAGUAAAUUAAAGCGCAAGAUCGAUCGAGCUCAUCUCUUCAGACUAGAUCCACAAAUUAAAGGCGAGAAAGAGGGAAAAAAAAGAUUAGAGAUUGGAUCGAUGGAUGGAGAGAUGGCAUCUGCCAGCCAGAGGCCAUCGUUGUCGCUCGCUUUUUCACGCUGUGAUGAGGACAAUCCUGCAAUACCUCCGGCUUUUUGGCUUGCAAACUUCGCACAAAUCUUCCAUGGCCUCCUUCCGCGGACACGGACAGCGACCUCCCAUCCGCUGCCCUCUGCAUGUGUACAAUUCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.15%
ME_num:
MEP:
2.24%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
0.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.08533944430065 | 0.0239428465553358 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.14714355895047 | 0.00376639272187334 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.33794263050316 | 0.0120182342539279 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.70202518087977 | 0.013353522078598 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.45046360862217 | 0.00923888674044761 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -5.01136594498992 | 0.00759131804295575 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.19334985368481 | 0.0371900461858854 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 8.02323434899336 | 1.05221942866811e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.99744597042254 | 0.00668029874685702 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.77405405393602 | 0.00353562200358451 |