Chr:
Chr5
Start:
7714321
End:
7714881
Strand:
.
Ref_name:
OSA-LNCN5073
Sequence
(OSA-LNCN5073.1):
GAGCAAGGCAAGCCACCUUUGAACAUCUUGAGCCUAUAUUUGAACUAAGUUAUAUUUCUUGCAAAAUAUUAUGCAUUGCUAGGAUUGCACUUAAUAUGUUUGCCCCAUCUACGAGGCAGAUCGGUGAGCAUACCUAACUUGUUGCAUUUGAUCCUUCCAUUGUUAAUUGUUAUAUCAUGUUUCCUUGUAACCACCUGGUCACGCCUCGAUAUUCGUGCACUCUGUGCGAGUAUCGACGGUCGCCUUCAAACUUAAAAUAUGAUAAACAUCUUGGGUAAAACUUGGUUUACAAAACGAUUGGAAAACCCGACGCCUGGGUCGGUGUCUUGUGAAAGAAAAUGAGUUUUAAAAAUAAAACUCGCGACACAAGGCCAUUCCUGGGCGGAAUGCUUGUGCGGUCGCAUUUAAGGACCGAUUCCUUCGGAAUUACAUCCGAGCAUAUAAUAGUGCAACCACAUGGGUGGAAUAGGACACUCCUGGCUGAGUAAUUAGCUAAUCAGGGGAGCCUUGAUGCCGAGAGACAAGUGGAUUCGCCGGGGUGGUGUCGGGGAGGACCCCUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.43%
ME_num:
MEP:
9.35%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.94
Avg Expression:
1.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.78349147286991 | 0.0378490471639011 |