Chr:
Chr5
Start:
7701044
End:
7701443
Strand:
+
Ref_name:
OSA-LNCN5072
Sequence
(OSA-LNCN5072.1):
GAAAGAAUAAAACGAGGGGUUGUGUGUAGAUCGAAAACCUCAUCCGGUCCUCCAUCUCCGCUCGGCGUCAAUGGAGGCUCGAAUCCGCCCGGCAAAACCACAGUCGACGGAGUGGAAAAUCAAGUUUAAGCCUCCCGUUUUCCUUUUUCAAUACUCCUCUCUAAUCCUACCAUUUAAUUAAUCUCUCUUUCUAUCUCCUGGCUGUAGAUUUCGUUGCAUCGGCUGCAGCAUAAGCGACUCCAUUCAUUGUACUCGCUAAUUUCUUGUGCUCUUUGCCUUUUUGAGGUCCGUCGACGGCAGCAGCACUGAUGGCGUAAUCGCUAGCCAUGCAAACUAGCUGAUGCUACAAAGCACAAAGAGAGGCAAAUUUUCAAAGCUGUAGUCGUUGAUUUAAGAUUGC
Sequence
(OSA-LNCN5072.2):
CCAUCUCCGCUCGGCGUCAAUGGAGGCUCGAAUCCGCCCGGCAAAACCACAGUCGACGGAGUGGAAAAUCAAAUUUCGUUGCAUCGGCUGCAGCAUAAGCGACUCCAUUCAUUGUACUCGCUAAUUUCUUGUGCUCUUUGCCUUUUUGAGGUCCGUCGACGGCAGCAGCACUGAUGGCGUAAUCGCUAGCCAUGCAAACUAGCUGAUGCUACAAAGCACAAAGAGAGGCAAAUUUUCAAAGCUGUAGUCGUUGAUUUAAGAUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.74%
ME_num:
MEP:
15.85%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
0.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -5.66689034368919 | 0.000924964781978241 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.36241258390154 | 0.0060235800552598 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -2.81859735204215 | 0.0320068052301432 |