Chr:
Chr5
Start:
7410438
End:
7410782
Strand:
.
Ref_name:
OSA-LNCN5065
Sequence
(OSA-LNCN5065.1):
AAAAUCCAUGCAAGCUUUUGAAAAGACGGCUGGAUAUAUAUGGUCCGGUGCCCAGAAGGGCCAAACUGUGAUAGAUUUUUUUUUAAGAAGGGUACAACUUAGGACGCACACUAACACACUGCAUUCACACCACGACACACGCACACGUGCACGGGAAACGUGCAGUCCCACUAAACGUGCACGCGUAUGUGUACCCUAUUACCUAGCCGGGACCAACCGAAGUCAGUCCCGGGGAAACGGGGAAAAACCCUGGUGAGACAUGCGAGUUGCGAUCCCAGGGAUCGAACCCGCGCGGGCUGCUCGCUCACCUGGCGACGCUAGCCAACCGAGCAACGCUCGGUUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.91%
ME_num:
MEP:
15.04%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.96
Avg Expression:
14.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.90643558728876 | 0.0385098088598788 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.12423727162487 | 0.00608974994806876 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.38653449926035 | 0.0277208561069069 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.5517695809514 | 0.0216763095690124 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.93615642259517 | 0.00704918906463099 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.43858159330878 | 0.0130202521428311 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.83716447161191 | 0.0121868630346138 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.54272807207285 | 0.00191345347365945 |