Chr:
Chr5
Start:
6538275
End:
6544981
Strand:
-
Ref_name:
OSA-LNCN5046
Sequence
(OSA-LNCN5046.1):
UAUAAAUACGCCUCUAUCAGCUAGUUGUUGAUCACAUAUUCUCACAAGAUAAGCCGAUCGCAUACAAACUCACAAACUGCACACCGCCCUAUAUAUAAUUAAUCCCACAUUUGCAUUGCAAUUUGCAAUAUGGCUCCAGCUCCACACAUGGCGGCAAUGGUGAUCUUCUUCACUGCUCUCCUCUUGUUGGCAUCGUCAUCUUCUUGCCUUGCACGAGCUAGGAUGAUGAUGAUGCCAGGUGAUCAUGCUGUGAAUGGCAAGGAGACUAGUGCUUCUUCUAAGGAAGCUACUUCACCUCAUGAUUUGCUGCAAGGUGUAGCGCCGCCAUUGCCACCGUCGCCGCCGGCGACCGAGAUCAUCCGCCCGGACAGCAGCGGCUGGAUGCCGCAGGGGUCGGUACCCAGCCCAGGGAUCGGCCACCGGGCGUAGAUUUCUCCCUUCGUUUUAAAAUAUAGCAAUUUUAAAAUCGGAUGUAUGAAAUAUAUCAUAUCUGUUCAGAUUUGUGAAACUAGCUAGAACGUAUAUGUCAUUUAAUUUUAAGUUGCUAUAUUUUAAGACAGAUGGAGUAUAUUUCGAUCUAGCUUAACUACAUGUAGCUAAGCUAUAUUGUGUAUAAUUAAUUAAGUUGAUCAGGAUUCAAGAAGAGAUGCAAAUGGGUAUGUAUGUAUUCUUUCAUGUGCUUCGGAGAAUGCCUGUAUAAAAAGCCUCUGAACUUUGAUCGGGUAGUAAAUCCAACAUAUAUAGCUUGAACUGUACUAUUAACUAGUUUAUUUGUGAGUACCGCUAUACAUCGUCCGACUCCAGCAUACAACAGACCCUGCCUCAUUUGCCAAUCAAUUCACUUCAUACAAGCCAAGCCAGUUUCUCUCCAUGUGGGCCAGAGCAAGCAGCAGUUAAGCACUAGUUAUACGAAAGUCGUAUACAUCAGUUGUAUGUAUAGUAAUUUCCUUCAUUUGUUGACACCCUUAAACUUUGAAUCAAUCGGACAGGUAUGCGCAAAACCAUCUCUCAAAAUAAAGCAGACUAGGGGUUAUUUUGACCAUGUUUAAAAGUUCAAGGGUGUCAACAAAUGAAAAAAAUUACUAUACAUACAACUGGUGUAUACGACUUUCGUACAACUAGUGAACCUGCUGUAGCCCUAUCCUCUGCCUAGCCCAUCUGGCAUGCACAACAGGAAUUAAUAGCUAUCCCAUAAAAACUGUCAACUAAAUCAAUCUGCUGAUGUUGACAAGAGAGAACGACGUGACGAUAGAGAAAUGUCAUGUUAAGUUUAACACCGACUGUUAGCGCAAGAUAAUUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.23%
ME_num:
MEP:
58.33%
HE_num:
HEP:
27.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.71
Avg Expression:
8.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.14283441820603 | 0.000485015061036922 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.73250750322244 | 1.13687768577597e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.7221705788463 | 0.0222740027839612 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.61850302525847 | 7.55537219603956e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.94686514254533 | 0.00283490870567138 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.5525155207898 | 7.91796482583226e-08 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.19442130676667 | 0.000172770243851769 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -5.63775096657011 | 0.0321013479609585 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | 1.28346985346542 | 0.0241063652816971 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.6572394078392 | 1.58904901505449e-13 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.48356241828076 | 0.0216229622460025 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.97816400594993 | 0.000268312995743756 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.06586165875975 | 0.00111445180865793 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.49029618623307 | 5.66041588756657e-07 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.39530255639648 | 5.49270414519687e-05 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.46907154388012 | 0.0393878397570437 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.00853558265863 | 0.0473353020043027 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.64104111754655 | 0.00870596892236643 |