RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5039

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

6248031

End:

6248623

Strand:

.

Ref_name:

OSA-LNCN5039

Sequence
(OSA-LNCN5039.1):

CUGAAGGACAUGUACAGCGAGUUAGCAAGCUAAUUCAGAACUAAAGUAUAGUUGAUUACUAGAAUGUACUACUUUAUUUGAUCAGAAUAGGUUAAUUAUUCAUUUGCUCUUUUUAGUAUUUUACUGGAGUAUAAAGGUCUGUGCUAUUCUUGGUUAGCAUUAAAGUUGAAAGCUUAGAUACUUUCUUGUUUUCCUUGGAGUUGUGGGGUUGUGUGAGAACGAUGUAGAUGUUAAAAUGAAUUGUUUUUCUGAUUUUCCAACUGUAGACCUGAACUUUAAGUUGCUCAUGCAUGAUAGCCAUGGGCAAACCCGACAUGCACAUUAUGCAGCCAAGAAGAAUGCAUGCUGACUGCCACAGCGAAGGAGCUAGAGAAGUGCUGCCGGAAUCAAAUAGUUUACUUUGGUUGUUACAUGAAGAUCUGCUUAGCCAUUUUUUCUCUGCUUAAAAAUAUGUGGCAGUGUACGAUGCCGUGUGAGAUAAAAAUGUAAGUGACAAUUUUUGGUAAUUUAUUUAUCAAAUAUUAUGUCACAUGGAUUUCACGUGCAAGUGCAUGUUUCUCUAGAAAUACACACGGCGCAUGUUUUUUAAUAGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

449

LEP:

91.26%

ME_num:

8

MEP:

1.63%

HE_num:

34

HEP:

6.91%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.99

Avg Expression:

7.54

Tip: OSA-LNCN5039 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h-1.367167698475830.00223105933791409
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)7.523297910740320.000122575375594373