Chr:
Chr5
Start:
6148386
End:
6149571
Strand:
+
Ref_name:
OSA-LNCN5032
Sequence
(OSA-LNCN5032.1):
CUAAAAUAGCAUUCAUCCGUUGCAACGCACAGGCUUUUUUCUAGUAUUAAUAAAAUUAGAAAUAAAAGGUCUAAAAAAACAAAAAAAAUCCCUGCUACUGCGCUAAGAUUUCUCCAACAACGCUGGAGUGAGAAGGCGAUUCAAAAAAGUUAUGGCUCGGUCGCAAAGCCUGACGACAAAACUGAUCAAUGACACGCGCAGUGACAGAGCCACAUCCGUCCGUCCAUCCAUCCAUCCAAACCCCACACAACGUACUCCUCCGAAUCUCCCCUGUACACCGACAAAAGAUGUUCCCAGUUCAUGCCCUGCUGUCCUACACAUCACAAAGGGCAUGGCCCCCACAUGUCAGCCUCCUACGCUACCCUCCAAAACCUACUCCUACUACUUCCUACUACUACUACCAGUAGCAACAGUACUAGUACUACUCACUGGACACUGUACUCUACUACUACUACUCCAUGGCGGGCCCAUCUGUCAGUAGCUGGUCCACCCACUCGUCGUCGUCCACCGCCUCCUCCGCCGCCGCCGCCGCCGUGGCCCCGCCGCCGUGACCGGGCAGCGGCCACGGAAGGGGCGGAGGCGGCGGAGGAGGAGGCGGCGGGGCGAACGGUGCGGGCGUGGCGGCCGCGCCGGCGGCGGCGGCGGAGGAGGCGAGCUUGAUCUCCAGCUCCAGCCAGCUCAUCACCUCGGCGAUGGACUCCUCCGUGAUCCCCUCCGCGUAGUCCUCCUCCUCCUCCUCCUCCACCACCACCCCAGGCUCCGCCGCCACCUUCUCCACCGCCGCCGCCGCCUCCUCGGCUGCCGCAGCAGCAGCAGCGGCGGCGGCGGCCUUCCCCUUGGGCUUGGCCUUGCUGCCGCCCUUGGUCGCCUUCGGCCUCGGCUUCCCCUCGCCGCGCCGCUUCCGCUUCCGCGCCGCGCCGGCUUCGUCCUCCAUUGGUGGCUCACCUCGACGUCGCGUCGCGUCGCGUCGCGCGGCGAGGCGAGACACGAGAGGCGCGCGUAUAUGUAGCACCGCCCCGACGAGACGAGACGCGGAGGGAUGACGUCG
Sequence
(OSA-LNCN5032.2):
CUGCGCUAAGAUUUCUCCAACAACGCUGGAGUGAGAAGGCGAUUCAAAAAAGUUAUGGCUCGGUCGCAAAGCCUGACGACAAAACUGAUCAAUGACACGCGCAGUGACAGAGCCACAUCCGUCCGUCCAUCCAUCCAUCCAAACCCCACACAACGUACUCCUCCGAAUCUCCCCUGUACACCGACAAAAGAUGUUCCCAGUUCAUGCCCUGCUGUCCUACACAUCACAAAGGGCAUGGCCCCCACAUGUCAGCCUCCUACGCUACCCUCCAAAACCUACUCCUACUACUUCCUACUACUACUACCAGUAGCAACAGUACUAGUACUACUCACUGGACACUGUACUCUACUACUACUACUCCAUGGCGGGCCCAUCUGUCAGUAGCUGGUCCACCCACUCGUCGUCCUCCAGCCAGCUCAUCACCUCGGCGAUGGACUCCUCCGUGAUCCCCUCCGCGUAGUCCUCCUCCUCCUCCUCCUCCACCACCACCCCAGGCUCCGCCGCCACCUUCUCCACCGCCGCCGCCGCCUCCUCGGCUGCCGCAGCAGCAGCAGCGGCGGCGGCGGCCUUCCCCUUGGGCUUGGCCUUGCUGCCGCCCUUGGUCGCCUUCGGCCUCGGCUUCCCCUCGCCGCGCCGCUUCCGCUUCCGCGCCGCGCCGGCUUCGUCCUCCAUUGGUGGCUCACCUCGACGUCGCGUCGCGUCGCGUCGCGCGGCGAGGCGAGACACGAGAGGCGCGCGUAUAUGUAGCACCGCCCCGACGAGACGAGACGCGGAGGGAUGACGUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.19%
ME_num:
MEP:
38.21%
HE_num:
HEP:
12.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.81
Avg Expression:
17.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.47861847258986 | 0.000184375167710369 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.51072354620104 | 0.00509066497689076 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.83440881742523 | 0.0118053288088946 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.43806535036508 | 0.00537261980170444 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.0746640641731 | 0.00678135913122319 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.31627867553365 | 0.000415273206409945 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.8441894399368 | 0.00860723366986126 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.69307333474252 | 0.0387572048033789 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.87422399126252 | 0.0417112037472746 |