Chr:
Chr5
Start:
5673001
End:
5674397
Strand:
+
Ref_name:
OSA-LNCN5020
Sequence
(OSA-LNCN5020.1):
GUAUCACUUGGCAUUAUUAACUAGCUGCAGCGUCACAUAUUUCACUACUAGAAAAAGCAUUUUCGCCAACGUUGGAUCUUUAUUUUCGCAGGUGGAUAUGACACCCAGAGCCAAAUAUCCGCCUACGAAAAUAUAAACCGAGAAGGUAGCUUAUGUGGUCCGCCUGCAAAAAUCAUACCUACAUAAAAUAAACUAAGUCCCCUAUCAUAUCUUCUCUUCCAUCUUAUCCUCUCCCCACCACUCAUUCCCCUCCCCCUCUCUCUCUCUUCAUCUGGCCUCCCUCCCCUCCCCUCCCCUUCCUUCCCUCCCCUCCCCUCCUUCCGGCGGAGGGCGUCGGCGGCGGCGCCGGCGGAGGGCUUCGGCAGAGGCUUGGGCGGAGGGGGUCGGCGGAGGGGGCCUGCGGUGGCGCGGGCGAAGUGGGAUGGCGGCGGCGCGGGCUGAGGGCGUUGGUGACGGCGCGGGCGGAGGGGGCCAGCGGCGGCGCGGGCGGAGGGCGUUGGUGAUGGCACGGGCGGAGAGGGUCGGCAGCGGCGCGGGCAGAGGGCGUCGGCGACGGCGCCUACGACGACUACCACGCGACGACGAUGACAACCACUGGCCACGUCGCUGCCCCUCCCCUCGACCCCUCCCCUCUCAGAUCUGGCGGAGGGGAGGGGUACGUGUCGGCGGCGGCUGUGUGGGCUUGCUACCCCAACCCACCCCUCCCAGAUCCGGACGGAGGGGGGAGGAGGCUGUGGCGGCGGCGGCCACCCCAUGCAACGGAGGAGUUCACCGGCGACGAUGUCUUCUUUUAAGUUUACAUAUUGUUCAUUGUUGUUAACUUGCUGUGGAUUUGAAUCCAAUACUUUUGUGUUGCAACUUUACACUAUCUGUGAUUGGAUUUUGUUUCUUGGAUGAGAUUUGUGAGGAUUUGUGAUUUGUGAUUUGAAACCCUAGGGACCGACAAUAUUUUUGCAGGCGGGGCUACUGUAGCACCUACAGCGCCUGCGAAGAUUCGAACUGCCGCCUACGAAAAUCGUUGGUCCGCUUGCAAAAUUUGGGGAUUUUUAGCGUCAUUUGGAUACAGGCGGAAGGUUUUGCCUCUGCGAAAACAUGUUUUGACCGCUGGACAAAUAUUUUUUGUGUUUAAUAACCAGGAGGAAUAUACGGGCUAUUUGGUUUCAGAAUCAAAUUAAACCACUAAAAACUGGGUGAUCUCUUCCAAUAGGAUUAUAUAUUCCUCCAUAUAUUGUAUUUUACUACUACUUCACUUAG
Sequence
(OSA-LNCN5020.2):
CUUGGCAUUAUUAACUAGCUGCAGCGUCACAUAUUUCACUACUAGAAAAAGCAUUUUCGCCAACGUUGGAUCUUUAUUUUCGCAGGUGGAUAUGACACCCAGAGCCAAAUAUCCGCCUACGAAAAUAUAAACCGAGGUGAAUUUUCAUCAUCCGCCUGCGGAAAUUAAUUUUUCCAGGCGGACCACUUAAGAGGUCCGCCUACGAAAAUACCUUUAUUUUUAUAUGCGGACCUCUUAAGUGGUCCGUCUGAAAAAAAUAUGAUUUUUGAAUUUUUGCAGAAGGUAGCUUAUGUGGUCCGCCUGCAAAAAUCAUACCUACAUAAAAUAAACUAAGUCCCCUAUCAUAUCUUCUCUUCCAUCUUAUCCUCUCCCCACCACUCAUUCCCCUCCCCCUCUCUCUCUCUUCAUCUGGCCUCCCUCCCCUCCCCUCCCCUUCCUUCCCUCCCCUCCCCUCCUUCCGGCGGAGGGCGUCGGCGGCGGCGCCGGCGGAGGGCUUCGGCAGAGGCUUGGGCGGAGGGGGUCGGCGGAGGGGGCCUGCGGUGGCGCGGGCGAAGUGGGAUGGCGGCGGCGCGGGCUGAGGGCGUUGGUGACGGCGCGGGCGGAGGGGGCCAGCGGCGGCGCGGGCGGAGGGCGUUGGUGAUGGCACGGGCGGAGAGGGUCGGCAGCGGCGCGGGCAGAGGGCGUCGGCGACGGCGCCUACGACGACUACCACGCGACGACGAUGACAACCACUGGCCACGUCGCUGCCCCUCCCCUCGACCCCUCCCCUCUCAGAUCUGGCGGAGGGGAGGGGUACGUGUCGGCGGCGGCUGUGUGGGCUUGCUACCCCAACCCACCCCUCCCAGAUCCGGACGGAGGGGGGAGGAGGCUGUGGCGGCGGCGGCCACCCCAUGCAACGGAGGAGUUCACCGGCGACGAUGUCUUCUUUUAAGUUUACAUAUUGUUCAUUGUUGUUAACUUGCUGUGGAUUUGAAUCCAAUACUUUUGUGUUGCAACUUUACACUAUCUGUGAUUGGAUUUUGUUUCUUGGAUGAGAUUUGUGAGGAUUUGUGAUUUGUGAUUUGAAACCCUAGGGACCGACAAUAUUUUUGCAGGCGGGGCUACUGUAGCACCUACAGCGCCUGCGAAGAUUCGAACUGCCGCCUACGAAAAUCGUUGGUCCGCUUGCAAAAUUUGGGGAUUUUUAGCGUCAUUUGGAUACAGGCGGAAGGUUUUGCCUCUGCGAAAACAUGUUUUGACCGCUGGACAAAUAUUUUUUGUGUUUAAUAACCAGGAGGAAUAUACGGGCUAUUUGGUUUCAGAAUCAAAUUAAACCACUAAAAACUGGGUGAUCUCUUCCAAUAGGAUUAUAUAUUCCUCCAUAUAUUGUAUUUUACUACUACUUCACUUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.78%
ME_num:
MEP:
5.28%
HE_num:
HEP:
70.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.72
Avg Expression:
74.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.5043053560648 | 1.68263253729945e-54 |
| 2 | IR64NIL // root // control--/--IR64NIL // root // Al | -1.02879415714841 | 0.00317082448855939 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.06489436253198 | 0.0178800269929878 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.23014139384894 | 6.0700681105016e-22 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -9.52118506500541 | 1.90050102442113e-36 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.30862768845956 | 9.58288874456006e-254 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.02356417179379 | 0.0234935539432315 |