Chr:
Chr5
Start:
5472716
End:
5510587
Strand:
-
Ref_name:
OSA-LNCN5018
Sequence
(OSA-LNCN5018.1):
CAAACGCGUAAUAAUAACAUUUCUAAAUGCAGUAAUAACGACGUUGUAACAACUAUUUCCUUCGUCCCAUAAAAAACCAACUUCUGGAGAUGAACCAGCUAGCUUUCCUAGAAGUUAUCUUUUUUUUUUUUUGACGGAGGGUGUAGUUUUUGGUCUCAGGUUUGCUCGUGGCAACUGGCUUCUUUUAAGCCCUCUGUGGAGUCCGGAAUCUAGAAAUACACAUUAUAGUGAAUCAGGGAUGGAGACUGAUGGAGACUUGUCAGUGGCGACUAUCACUUGUGACGGACUGCAAAAUUUCACCCUUCACAGGGGAGAUUGUUCUCUAAUGGGCCACAUAUUAUCACCCGUCACUGAGCAGCUUAACAGAAAAAAGAACAUGACGGAGCUCGAUCAUGACAAUCUCACAUCUCACAUGAGGAACCAAAAGAAAUUCCUAUGGAAACAACAAUUUUCGAAUGGAGCUCAUAGGGGUAGAGAAGACCUAGAAUGACCGCUGGAGCUCCCGGGAUUACCGGUGAGGAUGUUGCACCUAGCCGCCAGCAGGACCACCUUCUCCACCGCCGCCACCAUCCGCCACAAUCUUCAGCAAGUUGAAUGUCGAGCUUGGAGGAGGCAAGUGGAGCUCGAUGUGGAAGAGGCGGUAGCCAGAGCUUGAGGACAAAGAGGUGACAACCGACACUCGAGGGCAGAGGAGACGACGAUGGUCGGGGCCGGAGCUCCAGGUGGAGGCGGCAGAGACGCUUGUGAGCGGGAGAGACGACACGACAAUCGCUGGAUCCAGCGACCGCGAUGUCGGGGGCGGUCAUAUCCUACGUCCACCAACCUUGAGGAGCCCGGAUCUGGCGCCCCUAAGGCUCGAGAGAGGAGGUGGCGGUGGCCCGAGCUCACAGGUGAAGAGGUUGCCGCCAGCACUCAGGAGCGGAGGAGACAUCGAUUAUGGUAGCUGGAACUCGAGGUGGAAGCAAUGGUGGUGCUUGUGAACAGAGAGAACACAACCAAUGUUGGAUCUAGCCACCACGAGGUUGGGGUUGGUCAGAUCCGGUGUCCCCCGACCUCGGGGAUGCCAGAUUUGGUGUUCUUAGGGCUCGGCGGUGAUGGAGGGGAUGGUUGCGACAUUGGUGGUUUGGGGAUGAAAAUGGUGGCGACGGUUUCUCCGGGGUAUAGGUAGCGAUAGGUGCUAUCGGCACCCUGGGAUGGAAUUCCCGAAUACCUGGAGCGUACACUAAGUCCCAUGAUCAGUGGUUAGUACACGCAUCCACAACAUCUUUAUCACAUCCAUACCAUGUACAUGGCACAUAAAUAGAAAUGGUGGCUCUUAUAACUUAGCAGUGAAAGAGUCAUACAAGAUAGUUAAGACAACUGGGAUAAGCUAGGCCAGCCGCCCGGCUGCCGCAGAUUUUGCUGUUGCCACAGCUUAGAGGAGAAGAUACGGUUGCGAUGAUCUCCACCCAACGAUGACAUAGCAGCUUCCACAUCCACAGCCGUAGUUGUCAUUGUCGCCGUGUGGGUGGGGUGAUGAGCCAUGGGGUUCGUGCUCGUGUGGCCGACCAUGUCCACUGGGAUAUCCUCCAUGGGGGUACACAACGUGUCACGGAUGUGCUCGUUAGGGUGACCCCUAUGGCGCUACCUCCAACCGCUGCACGCCACUUUGUUCAUGUGUCAUCCAAAAGGGAUGUGGCGGCGGCAAAUGGACAGUGGGCGUGGUUGUGGCCCCACUGGGGAUCGAUGAUGACCAGCUCGUUGGAGUAUGUCUGGUAAGGAGGGGAACGAACAAAGACUGGAGGGAGAAGAUGUUGCGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.76%
ME_num:
MEP:
25.81%
HE_num:
HEP:
14.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.94
Avg Expression:
18.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.1292587905525 | 9.34833793839369e-05 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.50304666312057 | 0.00697070890274827 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -5.66455103721861 | 0.00347595207066443 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -5.51716953586762 | 0.00843811561504271 |
| 5 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -2.32814763254933 | 0.000700889951052631 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -6.38939347024723 | 5.35656405558e-05 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.62898892465696 | 3.62838635217679e-09 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -6.58721201261772 | 9.53157608966834e-06 |