Chr:
Chr5
Start:
5289969
End:
5290594
Strand:
+
Ref_name:
OSA-LNCN5013
Sequence
(OSA-LNCN5013.1):
CCACACAUUUCCCAUCCAAUCCAGUGAAUCCAAAUUCAACAAAGAAGUCACCAGUUCAUCCAAAAUUCAGUUUCACACACACCAGCCAUAUUUCAGUUUCACAAGAAUCAAUUCAAGCAAAGAAAGCAAACAAAAUCACAUGUAAAAUCAUUCCUAAAAUCACUUUAUACAUAUAGCUCAUCCAUCUUCAUCAGCAAAAACUCCCACAUCGCCGGGAGGGAGGGAGAGGCCGGGAGCCAUCGUCUGCCGCCGCUGCCUCACGGCCGCGCCCCGCCGUCGUCCGCCGCCGCCGCCACCGCACGGCCACACUCCGCUGUCAUCCGCGCCGCCGGCCACCGUCCUCCCCCCACCCCCUCCGGCCAGAUCUGGGAGGGAGGGGCCGGGAGCCGUGCCGCCUCAACCCUCCUCGCCGGCCGCCGCCGCCACCGCCCGUCGCCGCUGCCGCCAGGAGCACGCGCCGCCACCGCCGCCUCUGGCCGGCGGCCAGGAGAGGUGAGGGGAGGAGAGGGGCCGAUGAGAGAGGAGAGGUGUGGAGGGGAGGCCGGGAGGAGAAGUGUUGAGGGAGAGAGAGAAAUGAGUGGUGGGGAGGGGGUGGGAGGAGGAGAUAAGGAGUUAAGAUUUUUUUU
Sequence
(OSA-LNCN5013.2):
UCCCAUCCAAUCCAGUGAAUCCAAAUUCAACAAAGAAGUCACCAGUUCAUCCAAAAUUCAGUUUCACACACACCAGCCAUAUUUCAGUUUCACAAGAAUCAAUUCAAGCAAAGAAAGCAAACAAAAUCACAUGUAAAAUCAUUCCUAAAAUCACUUUAUACAUAUAGCUCAUCCAUCUUCAUCAGCAAAAACUCCCACAUCGCCGGGAGGGAGGGAGAGGCCGGGAGCCAUCGUCUGCCGCCGCUGCCUCACGGCCGCGCCCCGCCGUCGUCCGCCGCCGCCGCCACCGCACGGCCACACUCCGCUGUCAUCCGCGCCGCCGGCCACCGUCCUCCCCCCACCCCCUCCGGCCAGAUCUGGGAGGGAGGGGCCGGGAGCCGUGCCGCCUCAACCCUCCUCGCCGGCCGCCGCCGCCACCGCCCGUCGCCGCUGCCGCCAGGAGCACGCGCCGCCACCGCCGUGUGGAGGGGAGGCCGGGAGGAGAAGUGUUGAGGGAGAGAGAGAAAUGAGUGGUGGGGAGGGGGUGGGAGGAGGAGAUAAGGAGUUAAGAUUUUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.02%
ME_num:
MEP:
5.49%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
8.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.10399556963723 | 6.78985213513826e-07 |
2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.53593527745048 | 7.04350819889527e-11 |