Chr:
Chr5
Start:
4574809
End:
4576247
Strand:
-
Ref_name:
OSA-LNCN5002
Sequence
(OSA-LNCN5002.1):
GCGAGAUUUUUUAAGGUCUUUUAUCCAUAAAAUCAGAAAUGUGUACCUCUAAACUUACGUAAACCGUGCACACAAGGUCCUAUAGCAGUAUACAUGGGUGGUUUUGCUGACGUGGCAUCCUAGUCAGCAAAACAAAUUAAAAAAAGUGCGUGAGGCCCAUGUCAGCUGCACAUCUCUUUCCUUUUCCUUUUCCUUUUCCUUUUCUUCUCUUUUCUCUCUUCUCUCCUCCCUUCUUCGGGCCGGAGAGAAGAGAGAAAAGAGAAGAAAAGGAAAAGGAAAUAGAUGUGCAGCCGACAGGUGGGCCCCACGCACUUUUGUGGGGCCAUGUAUACUGCCAUAGGAUCUUGUGUGCACGGUUUGUGUAAGUUUAGGAGUACACAUUUCUGGUUUUAUGGUUAAGGGACCUCAACAAAUCUCGCUGUUAAGUUGAGGGACCACCGGUGAACUUAUUCCAAGAGAUAAUGAUA
Sequence
(OSA-LNCN5002.2):
GCGGCGGGCGGAAUCGGCGAGCGCGGUUGUGCGCGAGCGCAGCAGCAGAGCGGCGGCGGGCUGCGGGCGGAGCAGACGGCGGGCAAGCGCGGCGGCAGAGCGGAAGCAGCCCCGCCGGCCUACUCCGGCCGUCGCGAACACCACCGACGGCAAGACGCAGACCACCGACGGCAAUAACGUAAACCACCACAUCACACCAACACCAGUACAAGACUAUAUACAGGAAGCAGAGCUAAUAAGCCGCCAUUGACCACCUUCAAUUCAUUCCUCUCGCUUCUCAAUUCGCUAUCUAUCUCCUCAAUCUCUUUUUUCCUGUCACCAUUAAUUCCACGUACACGGCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.8%
ME_num:
MEP:
37.6%
HE_num:
HEP:
12.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.85
Avg Expression:
7.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.92682852357467 | 0.0350446994939229 |