Chr:
Chr5
Start:
4487561
End:
4492287
Strand:
+
Ref_name:
OSA-LNCN4998
Sequence
(OSA-LNCN4998.1):
CAUCCGAGCUCUUCGAGCUCUGUCUUUCUCUCUCUCUUCCUCAAGACCGGCUGCCACCACCGUCAGCCGAUCUCUCUCGCCGGAGCGCCACUAACCAAAUCCUCUCACCACCAACCUUGCCUCACUCCGGCCAACCAUUUUUCUCUUUUCCCCUUCUCUUUCGUUCCGUAUCAAGCCCCACCGGAGCUCUCUCUCUCCUUCCGGUUCACGCAAUUGUGCUCGCCGUUCCGGCUAUUCUCCUAGCUCCCUUGUCCGGUCACCGCACUCCCUAGGUACGCCGCACCCGGGAACACAACCCGCCGCCGCCGUCACCAUCUUCCGUCCACCGGAGCGCUACCGCCUCACCCGCCUUCUCCUCUCCCUUCUCUCGACUCUCUAUCAGACAGGAAGAAGACGAGAAGAAGGAGAGAGAAAGAGAAAAGGAAAAGAAAAAGGAAAGAAUACAUCUGACAGUGAAAUUUGGUUAGCCCGAAGUCAUCAUCGGCUUAGAGUCAAUAUCGGCUUCAGAGUCCUGGAAUCAGCCGAUGGGAGUCGUCAAAUCGCCAGCGACCGUGUUCUCAGUGGAAUCGGAUCAACUAAAGGGAAUUUAUCCAGAAGAGUUCGAGUUCAAGAAGGAUGCGGCAUGGCAAGUUAUCUAUUAAUUAGGGAUAGUUUAUUAGUUUUCUUUUAUCUUUAGGAAAGUGUGUUUAGUGUCCUAUAAGGACUUUAUCUUUUCCUUUUAUCUUUAGUUUCUUUCUUGUCCGACAAGGACUUGUAUCAACCCAUGGGUAUAAAUAUGUACACCCGGGGUCUAUGUAAUCUAUGAAUCUCUCGAUCAAUAUUACUCUCGGCGCAUCGCCACCCUCUUUCCCGAGGUUUUUACUUAUCAACCAGCGGAACUUGGCACCUGACGCUGGGCUGCAUCGGC
Sequence
(OSA-LNCN4998.2):
GCUCUUCGAGCUCUGUCUUUCUCUCUCUCUUCCUCAAGACCGGCUGCCACCACCGUCAGCCGAUCUCUCUCGCCGGAGCGCCACUAACCAAAUCCUCUCACCACCAACCUUGCCUCACUCCGGCCAACCAUUUUUCUCUUUUCCCCUUCUCUUUCGUUCCGUAUCAAGCCCCACCGGAGCUCUCUCUCUCCUUCCGGUUCACGCAAUUGUGCUCGCCGUUCCGGCUAUUCUCCUAGCUCCCUUGUCCGGUCACCGCACUCCCUAGGUACGCCGCACCCGGGAACACAACCCGCCGCCGCCGUCACCAUCUUCCGUCCACCGGAGCGCUACCGCCUCACCCGCCUUCUCCUCUCCCUUCUCUCGACUCUCUAUCAGACAGGAAGAAGACGAGAAGAAGGAGAGAGAAAGAGAAAAGGAAAAGAAAAAGGAAAGAAUACAUCUGACAGCCCGAAGUCAUCAUCGGCUUAGAGUCAAUAUCGGCUUCAGAGUCCUGGAAUCAGCCGAUGGGAGUCGUCAAAUCGCCAGCGACCGUGUUCUCAGUGGAAUCGGAUCAACUAAAGGGAAUUUAUCCAGAAGAGUUCGAGUUCAAGAAGGAUGCGGCAUGGCAAGUUAUCUAUUAAUUAGGGAUAGUUUAUUAGUUUUCUUUUAUCUUUAGGAAAGUGUGUUUAGUGUCCUAUAAGGACUUUAUCUUUUCCUUUUAUCUUUAGUUUCUUUCUUGUCCGACAAGGACUUGUAUCAACCCAUGGGUAUAAAUAUGUACACCCGGGGUCUAUGUAAUCUAUGAAUCUCUCGAUCAAUAUUACUCUCGGCGCAUCGCCACCCUCUUUCCCGAGGUUUUUACUUAUCAACCAGCGGAACUUGGCACCUGACGCUGGGCUGCAUCGGC
Sequence
(OSA-LNCN4998.3):
UCGAGCUCUGUCUUUCUCUCUCUCUUCCUCAAGACCGGCUGCCACCACCGUCAGCCGAUCUCUCUCGCCGGAGCGCCACUAACCAAAUCCUCUCACCACCAACCUUGCCUCACUCCGGCCAACCAUUUUUCUCUUUUCCCCUUCUCUUUCGUUCCGUAUCAAGCCCCACCGGAGCUCUCUCUCUCCUUCCGGUUCACGCAAUUGUGCUCGCCGUUCCGGCUAUUCUCCUAGCUCCCUUGUCCGGUCACCGCACUCCCUAGGUACGCCGCACCCGGGAACACAACCCGCCGCCGCCGUCACCAUCUUCCGUCCACCGGAGCGCUACCGCCUCACCCGCCUUCUCCUCUCCCUUCUCUCGACUCUCUAUCAGACAGGAAGAAGACGAGAAGAAGGAGAGAGAAAGAGAAAAGGAAAAGAAAAAGGAAAGAAUACAUCUGACAGUAACGUAUCGUAUUACUGCACUUCUACGAUAAUGUUAGUACCGAAUAAUAGUAACAAGGUAUGGUUCCUACAGUAAUAUAACCAGUUUGUGUUCACAAAAUUUGAAUAGAUAUAUAGAUAAAGCAAAUAAUGAUCCUAUAUCAUAUUGUAUCAUAGGGUCAAUUGGUUAGGAGAGUUUGUUAUGAACUAUGAGAUCAUGUGUUCUAGUCUUGGAUACACCAAUUUAUUUUUAAUUUUUUUAAAAAGAGACAAGAAUAGGAGGAAAAAUAAAAAAAGAGAGAAGAAUUGGAGGAAAAAUAAGAGAAGGGAGGGAGAAAUUGACAGAAGAGAAGAAAAAGAAAAGAAGGUAGGGAGAGAUCGGGAGGAUGGGGCGCCCCGCGCCGGGAGGGGGGAGGUGUAGAAUCGAGCUACACCUCCCCUUUAGAAUAACUAUUCUACACCCCCCCAACCGAACCACACCUCCCUUUCCCCAUCCCGCGCGCGGCCCCUCCUCCUCUCGCCAUCCCGUCGCGCCCCCCUCCUUCUCGCGCCUUUCUCUCCCCCCUCCUCCCGAUCCCUCUUUCCUCCCCUCUUUUCGUUUUUCUCUCCCUCCUCUCCUCUGCCCUUUUUUGUAGCCCCCUCCUUGUUGCGCCUCUCUCCCCCUCCUCUCGAUCCUUCUUUCCUCCCCCUCUUUUUUUGUUUCUCUCUCUCCUCUCCUGUCUUUUUUUUCUUUUCCUCCCGAUCCUUCUCUCCUCCCUCUCUCCCCCUCCUCUCGAUCCUUCUUUCCUCCCCCUCUUUUUUUUGUUUUUUUUCUUUUCCUCCCGAUCCUUCUCUCCUCCCUCUCUCCUCCUCCUCUCGAUCCUUCUUUCCUCCCCCUCUUUUUUUUUCUCUCCCUCCUCUCCUGCCUUUUUUUUCUUUUCCUCCCGAUCCUUCUCUCCUUCCCUCUUUUUUCGUUUUUCUUUUUUUUUCUCUUCUCUCCCUUUGCUUCACCUUGGUAAGAAAAUUAAAAAUUAAAAAGACAAAUCAAGACUUGAACCCAUAAUCUCAUGUUUCAUAGCAAACUCUUCUAGCCAAUUUUCCUUAUGAUACUAUGUGAUUAGAGAUCAUUGUUUGCUUGCUUUGUAUGUAUGUCCAAAUUUUAUGAGAACAAAUUAGUUAGUUAUGUUACUGUAAUAAUCAUACAUUGUUAUUAUGAUUCGGCAGUAACAUUAUCACGGAAGGGUAGUAAAUAUGAUACGUUACUGCAAAAUUUAUAGGUAGUUACUGCACUUUUGGCAGUAACAACAUAACGAAAUUUGUAGUAACAGAGAACAUGCAUAGUAACAAUGGCUCUAUAGUAGAAAUGGUUUUGUAGAGCUAAAAUAUUUUAAAUCUCAAUCUUUAGAGAGUAGUAACGUACACGUCAUGUCUUAUUUUUCUAACCCGUUUGCAUCAUGGCGUUUGUAAAAAAAAAAGUGCUUAACGAAACUAGAACCACCUGUUAACAGUGAAAUUUGGUUAGCCCGAAGUCAUCAUCGGCUUAGAGUCAAUAUCGGCUUCAGAGUCCUGGAAUCAGCCGAUGGGAGUCGUCAAAUCGCCAGCGACCGUGUUCUCAGUGGAAUCGGAUCAACUAAAGGGAAUUUAUCCAGAAGAGUUCGAGUUCAAGAAGGAUGCGGCAUGGCAAGUUAUCUAUUAAUUAGGGAUAGUUUAUUAGUUUUCUUUUAUCUUUAGGAAAGUGUGUUUAGUGUCCUAUAAGGACUUUAUCUUUUCCUUUUAUCUUUAGUUUCUUUCUUGUCCGACAAGGACUUGUAUCAACCCAUGGGUAUAAAUAUGUACACCCGGGGUCUAUGUAAUCUAUGAAUCUCUCGAUCAAUAUUACUCUCGGCGCAUCGCCACCCUCUUUCCCGAGGUUUUUACUUAUCAACCAGCGGAACUUGGCACCUGACGCUGGGCUGCAUCGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.55%
ME_num:
MEP:
12.4%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.99
Avg Expression:
18.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.76050900520673 | 0.0476930345286967 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.35827755238575 | 0.04731398442632 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.71718237199968 | 3.43277276665918e-10 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.54162649883231 | 0.0111738706560102 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.36518724100498 | 0.0119782853248574 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.85585987861846 | 1.84676134448263e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.53326878514366 | 0.0191804670094053 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.99037539554855 | 0.0123024235318376 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.78067737117883 | 0.0225716237618026 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.7421743136223 | 0.0145936570525219 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.31336981622037 | 0.00660538332366604 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 7.53162528392699 | 1.79256206920526e-05 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.55679830560755 | 0.00369887821361897 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 7.53153370238328 | 1.81581757318488e-05 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 7.53144497225799 | 1.79999619195398e-05 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.43438707460585 | 0.0304562179382752 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.40085759677206 | 0.00508123870415739 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.29857068124142 | 0.0414461361763684 |