Chr:
Chr5
Start:
3980496
End:
3983780
Strand:
+
Ref_name:
OSA-LNCN4992
Sequence
(OSA-LNCN4992.1):
AUGAUAUCGUUGCAUGUCAUGUCUAUUCGUUUAUGUGUGUUGGAGUAAAUGUAUCGUUACAUGUCUGUUUGUUUAUUUGUGCAUGAGUAAAUAAUAUUGUUGCAUGCCCCACAUGUAUGCUAGUGUAAGUUUGUCUGUCCACACGUAUGCCUAACAUAACACCUUGAUCGAUGAUGUUUAAUUUCAGAAGUAAGGAUACUUUUUUCCUCAGUCUCGACAUCAUUCGUAAAUAUGCAGAUCAAUUUAGAUUUAGGGAAUAUUACUACAGUGGAGAGGAUGACUGCUUUGGAAUAAUCACAUAUAUGCAAAUUUCCUGUUGUUUGUAAGACAGAACACAUCUUGAUCAAAUUCAUAUCCAAGGCCGAAGGCUCACUCUCCAGGCUAGUAGCCAUCUGGAGCCCGGCUUGGAGCUCGAUCUCCCUCUUGACAAUUGUAGUUCCACCAUCGAGCAGCGUAGCGUGCGGUGGACUCGGCCUUCGGAGAACAGCGACGACGAUGGUGGCCUCGGCCUCUCCGUUGGAGAAGGAGGGGUGGUGGCCGUUAACGGAGCCGAUGUUCUACACAACCAACCGUGUAAUGUUUCAGAGAAUCAGUUAUAAUUCUGAACUGAACAUUCUUCAACAUGUUUGAUUAUCAAUCAAGCAGAAAAGUUAGAAUGGAGAACCUGAACCUCAACAUGGACAGAACCGACAUCCCCCGUAGUAGAGUCGUCGUUGUCGAUGGUCUCGAUGGGAUCCACAGAUUGUUAAUCCUGCUGAGCCAUUCGUCCGUGCACAAUUACUAGUUUCUGCUCCUAUCCCUAAAAAAUCGAAGUUUCACUAGUCCACUCUGAAUGUUUCAGGCUGGUUCAGCUACCAGAUAAAGGAUGACUGCUCUCGAGUAUAUGCAAAUUACACAAGAAACUGAAUCUUCACGGUGUACGUUAAAAUCUGAAAUUGCUUGGAACAUAUGGCUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.94%
ME_num:
MEP:
10.98%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.88
Avg Expression:
2.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 9.23409177991903 | 5.87338146628171e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 7.76801677296602 | 7.62557352589904e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 10.1856213032321 | 4.15836923696693e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.94064701648627 | 3.7967502748379e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 9.82866423330485 | 7.54780032409759e-16 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.29220522823587 | 6.74374107742897e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.87833477269586 | 1.49141883251044e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.36965158767172 | 1.47308203937639e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 9.50927606937652 | 5.44859837474489e-15 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 7.6908139694061 | 1.52011715670229e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.58479902641455 | 4.35605469436674e-05 |