Chr:
Chr5
Start:
3876041
End:
3878542
Strand:
+
Ref_name:
OSA-LNCN4989
Sequence
(OSA-LNCN4989.1):
GCUCGCCGCUUCCUCCGCUCCGCCGCAGCCAACCCCUCUCUGCCUCUUUCCUCUGCGCCUGCGCCGCCGCCUCACCGGCCUCCUCGGCUCUCCACCCCACGCGCCGCCGCCAACUUCCUCCAUCCAUUCAUCCACAUCCGCGGUCAAUGGCGUCGAUGCGGCAUUGGCGACAACGGUAUGUUGUGCUCGUCAAUGGUGAGUUCUUGGCUGCUCGCUCUUUGCCUGGAUCCCCAAUCCAGUUUGUGCUCGGUUUCAGUCCCCGAAUCCCUCCUCUGCUCAAUGUUGGGGAUGAAGUACUUAUGAAUCAUCAUCACAGUGAGCCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.16%
ME_num:
MEP:
40.24%
HE_num:
HEP:
49.39%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.75
Avg Expression:
18.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.01231472888112 | 0.0183221380972425 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.36973353639402 | 0.00264549817183882 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.23036924170838 | 0.00819586485426326 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.23535226416499 | 0.0206742000595264 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.0488745424102 | 0.0270823288983239 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.77075658532325 | 0.000315551100473276 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.218425202407 | 0.00341799516569985 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.4429304615711 | 0.000696526740195463 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.97233388586503 | 0.0260847812707552 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.42024341866452 | 0.00115780673288593 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.10156354604143 | 0.00598315411285455 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.01534798804356 | 0.0375707570899728 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.25847501392333 | 0.0314998770529826 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.15819366838643 | 0.026870385041332 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.55894870977272 | 0.000194857418647471 |
| 16 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.34689509490691 | 0.00378866255506593 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.93498795988148 | 0.0295852016458502 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.67760800951379 | 0.000190040048287931 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.84294621596451 | 0.0151720612300746 |