Chr:
Chr5
Start:
3606182
End:
3607066
Strand:
+
Ref_name:
OSA-LNCN4982
Sequence
(OSA-LNCN4982.1):
CACUACUUGCACUUGCACGUCCGGACAAAAAAAAAACAAAUAAUAAUAGGGGCAACUGCAUCUUUACCCCUACUUCAUGUUUCAAUUGUGAUUUUGCCCCUACUUUUUAGGGUUUAUGUUUUUACCCCUUACUUUUUUCAAAUGAAUAUUCACUUUGCCCCUAUUCUGUUAAUAUCAGUUAACGGUGUCAAUUCAGCUGUGGCAAGACACGCAUGCCCCUUGUACAUUUGCCCAACCUUUUUUAGAAUUUGCAUACACGCAAGACACGCAUGCCCCUUGUACAAUUCAUGAGAAAUUCCUUGCGUUGCAAAUACUAUGAGAUGGGAAAAAAUAGAAAGAAAAAUCAAGCAGCAACAACAUCGUUCGUCUCUGUGGACGAGUCGCUGCUGUGUGUCGUUGUUGCUAGCUUGCCACGCCAUGCUGCUCGCUUCUCACCGCCGCUGAGGGGCAUCCUGUAGUUGACGCACAAGAGGGGAAAGAGCAACGAGCCCCCCCUGCUGAAGCGUAGCCGAGGCGCCCUGCUCCUCCCCCUUCUACAUCAUCGCCGAAGCCGCCGCUUGCCCGUACGCUGCCCUCUGGAGCUGCCGCCUUCCCGUGGCGCUUCACCGCCCGCCGCCGCUAACUGCUUGAGGCUUGAGCCCUGCACCGGAUUUGGAUGGGGACGGUCGAACGGACGUGGUGUUGGGCUAGUUAUUUCUUCCAGGGGGGCAAACUGCAGCUACGUUUGAAAAAAGUAAGGGCAAAAACACAAACCCUAAAAAGUAAAGGUAAAAUCACAUUUGUAACAUGAAAUAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.95%
ME_num:
MEP:
69.31%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.72
Avg Expression:
3.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.40561082359633 | 0.00556061543374224 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.84580665858237 | 0.000405124144010742 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.99841234738992 | 0.0134401452198783 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.4936834286272 | 0.00653702357498032 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.70356987013459 | 0.00637454337404772 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.30604323331816 | 0.000117240586410446 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.41084484896381 | 0.000142187491384718 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.06107003686363 | 0.0141960321051897 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.02090451893499 | 0.0022210220965847 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.47409153453914 | 6.03306414214026e-07 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.68206034657234 | 1.96851763709631e-06 |