RiceNCexp:Browse

OSA-LNCN4964

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr5

Start:

2541296

End:

2547332

Strand:

Ref_name:

OSA-LNCN4964

Sequence
(OSA-LNCN4964.1):

CCCAUCACCAAAUAACAAGGCAUAUAGCAUCACAUGUACUCCCUCCGUUUCACAAUGUAAGUCGGAGGAAGUAGCAACAAAUCCUGCUAUACUAAAAUAUACCCUCAGAAAUAAGUCACUGUCAAUGCUAAUUUGAACAGCAUAAAGUAAUAGGGCGAGAGAAAAAGGACUUGGAUGAGCAGAUGAAUAUUUCUAUCUUAAUUAAGAUAAAGAGUUUGUGGCUGACAAGUUCCAUGAAAAAGUAGGCACAUGCGAUGAUUUGAUUAUUGCUUUGCUGAACUGUUUUCUAACAUGUGAUGUGCUUGUAAGUGGGUGCAUAACAGUAUAACACCAAAAUACUUCUCCGGAAGAGAACUUUACUCACAGUUCAUAGCGUUUGUGUCAACUACUUCCUCCGUUUCAUAUUAUAAGACUUUCUAGCAUUGCCCCGUCUAGAUUCAUUAGCAUCUAUAUGAAUGUAGGCAAAUGCUAGAAAGUCUUCUAAUAUGAAACGGAGGGAGUACUCAACUGCCUCACUUCCAAAAAGAAUACGACUACUACAUCACGGUAUUCUAAA

Sequence
(OSA-LNCN4964.2):

AAUAACAAGGCAUAUAGCAUCACAUGUACUCCCUCCGUUUCACAAUGUAAGUCAUUGUAAAACGGAGGAAGUAGCAACAAAUCCUGCUAUACUAAAAUAUACCCUCAGAAAUAAGUCACUGUCAAUGCUAAUUUGAACAGCAUAAAGUAAUAGGGCGAGAGAAAAAGGACUUGGAUGAGCAGAUGAAUAUUUCUAUCUUAAUUAAGAUAAAGAGUUUGUGGCUGACAAGUUCCAUGAAAAAGUAGGCACAUGCGAUGAUUUGAUUAUUGCUUUGCUGAACUGUUUUCUAACAUGUGAUGUGCUUGUAAGUGGGUGCAUAACAGUAUAACACCAAAAUACUUCUCCGGAAGAGAACUUUACUCACAGUUCAUAGCGUUUGUGUCAACUACUUCCUCCGUUUCAUAUUAUAAGACUUUCUAGCAUUGCCCCGUCUAGAUUCAUUAGCAUCUAUAUGAAUGUAGGCAAAUGCUAGAAAGUCUUCUAAUAUGAAACGGAGGGAGUACUCAACUGCCUCACUUCCAAAAAGAAUACGACUACUACAUCACGGUAUUCUAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

276

LEP:

56.1%

ME_num:

139

MEP:

28.25%

HE_num:

HEP:

15.45%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

callus

Tau :

0.97

Avg Expression:

75.91

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-3.42568078312106	0.0259023499388555
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-4.43307392987334	0.00655613313980938
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-2.70255296213062	0.0302929389325012
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-3.59298669852989	0.0473397492391861
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-3.83712544822758	0.0248237029533128
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-4.96832195477784	0.004409753975609
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-5.65593152093062	0.000463431620163686
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-3.44217095860304	0.0324646903713242
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.39763705097522	0.00549725852374682
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-4.86965661236689	0.00198875370163353
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-4.29142657685792	0.010047173857999
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-3.53920669535495	0.00446869848030206