Chr:
Chr5
Start:
2393514
End:
2404599
Strand:
+
Ref_name:
OSA-LNCN4956
Sequence
(OSA-LNCN4956.1):
AGCAUGGUGGCCCACGCAGAUUGCGCGGCUAGCAUCAUUAUGUUUUCUCCCAUAUAAUAGCAUAUAUGUUUUCUCAUUAUAUUAUUCAAAUAUAUUAAAAUGACAACAUAAUUUUAAAUUUUGCAAUAACUUUACAAAACUACUAAUACGUAAUAUUCAUAUUAUAUUUUAUAUACGUGUUAGUUAUUAAUUAUUUUUAAUAUCAAAUUUUAGUUAUUUGUAAAUUAUAUAUAUUUCUAUAUGGACUCUAGACUCGUGUUUUAAUAUUUCUUUUUUUUAAUUCCGAAUUUUCUGUAAAUUGUAUUUCUAUAUAGACUCUAUGCUCUUCUUCCAAUAUUAUUUAUUUUUAUUUCUGAAUUUUUAUUAUUUCUAAUUGUAUUUCUAUCUGGACUCUAAACUCAUCUUUCAAUAUUCUUUAAUUUUUAAUUUCGAAUUUCAGUUACUUCUAAAUUGUAUUCCUAUAGUGACUUUAAACUCUUCUUCCCAUGUUUUUCUUAAUUUCAAAUUUUAGUUAUUUAUAAAUUGUAUUUUUAUACUGACUCUAAACUCUACUUUUAAUUUUAUUAAAUUUUAUUAUGUUUAUUCCAAAUUUUAGUUAGUUUUAAAUUCCUAUAUGGACUCUAUACUCAACUUCUAAUAUUCCUUAUUUUUUUAUUUCGAAUUUCUAUUUUUUUUUCUUCAUUGAAUUUCUAUAUGGACUCUAUACUCUACUUCUAAUAUUCCUUAUUUUUAAUUCCAAAUUUCAGUAUAUGGACUCUAUACUCUACUUCUAAUAUUCCUUAUUUUGAAUUCCGAAUUUCAGUUAUUUCAUAAUUGUAUUUCUAUAUGGACUCUAUACUCUACUUCUAAUAUUCCUUAUUUUUAAUUCCGAAUUUCAGUUAUUUCCUAAUUGUAUUUCUAUAUGGACUAUAUACUCUACUUCUAAUAUUCUUUAUUUUUAAUUCCGAAUUUCAGUUAUUUAUUUCCUAAUUGUAUUUCUAUAUAUGGACUCUAAUCUCAUCUUCUAAUAUUCCUUAUUUUUUAAUUCCGAAUUUCAACUAUUUCUAAAUUGUAUUUCUAUAUGGACUCUAGUCUCAUCUUCUAAGAUUCCAUAUUUUUUAAUUCCGAAUUUCAGCUAUUUCUAAAUUGUAUUUCUAUAUGGACUCUGUCUUUUCUUUUUCCCUAAUUAAUGUGAGAAUUUAUAGACCAUGAGAGCAAACAUGGAGGCUUCUUUUUCUAUUCCUUUAAUAAUAUAAUAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.29%
ME_num:
MEP:
67.48%
HE_num:
HEP:
14.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.64
Avg Expression:
6.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.48575539213459 | 1.67045489946094e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.29045903704705 | 1.05249758101038e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.39579359525009 | 3.14019254023805e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.55449226098025 | 3.89799690696308e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.84502930159604 | 1.22859449813609e-22 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.14786748667413 | 0.0311987898213033 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.76239319399502 | 0.0281985555939047 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.70527747889266 | 8.28728129494751e-25 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.30642449453348 | 5.04327955543256e-20 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.92075473628158 | 0.000119456178413979 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.59153939467284 | 7.60007631383902e-10 |