Chr:
Chr5
Start:
1571194
End:
1636499
Strand:
-
Ref_name:
OSA-LNCN4937
Sequence
(OSA-LNCN4937.1):
CCAACCUGAGCCGCCUCCUCUCCUCUCAGCCUAGCCGGAAAAGUCUAUUUUCCCUCCCUGCGCUACUGUUCAUCUUCCAGCUCAGGCAGAGCCCGAGCCGCCCGUGCUGUGCCCUGUGCAGCCGCCGCCUCCUCCUUCCAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAGAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCAAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUACGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUCCUCUUCCGUGCUCCGUAGCUCCGUCGCCACCGCCGCCAAGCAAACCGCCGCCGCCGGCCAUCUCCGGUGCCGCCGCGCCGCCGUCUCCAUCGUCGUCGCCGGUCUCCGUCACCACCGUUGGGUGCGCCGUGGUGAGGGGAAGCUCGGCCACCCUUCCUUUUCCGUCGCCGGUCAUCGGAGCUCCGCCGCCCCGUGCAACCCGAGCCGCCGCCGUCGCCUCCUCGUCGCCGGCCGUCGUCGGUCGUCGUUUGGCACGAGGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUCAAUGACGAUGAAUCGAGGUGAGGUCAAGACUGAAACUGUGAAACAUGCAUCUCACCAUCAGUAGGAAAAGAGGCAUUUAACAAUUUGAUGAUAGCAUCGGAGAUUCAGAGGUGCAGAUUAGCCUGAAAGUGAAAGCCCAUCUAGCUAGAGGGGACAAAUAGAAUGUGCAGACAGUGGUGCAGUAGUAGAAGACAAGUGCAAUCCUUGAUAUGAUUCAACUUGCUUGCAUUUGCAUAUCUUCUUCUUCAGAGAGAACAAAGCAGAGAGUACCAAACUCAAUGACCUUUCACUUAAUGUUUGCA
Sequence
(OSA-LNCN4937.2):
CGGCCGUCUUCAGCCACGCCGCGCCGUCGCUUGCGUCGUCGCCGCCGCUUGCCGCCGCCGCCGUUAGGUGCGCCGUGGUGAGGAGAACCUCGGCCGCCCGUCCCCCUUCGCCGCCGACCACCGGAGCUCCGCCGUCGCCGUCAAGCCGAGCCGCCGCCGCCGUCCUCUUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUAUGUAACGUCAUUAUUAAGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGAC
Sequence
(OSA-LNCN4937.3):
CCAACCUGAGCCGCCUCCUCUCCUCUCAGCCUAGCCGGAAAAGUCUAUUUUCCCUCCCUGCGCUACUGUUCAUCUUCCAGCUCAGGCAGAGCCCGAGCCGCCCGUGCUGUGCCCUGUGCAGCCGCCGCCUCCUCCUUCCAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAGAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCAAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUACGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUCCUCUUCCGUGCUCCGUAGCUCCGUCGCCACCGCCGCCAAGCAAACCGCCGCCGCCGGCCAUCUCCGGUGCCGCCGCGCCGCCGUCUCCAUCGUCGUCGCCGGUCUCCGUCACCACCGUUGGGUGCGCCGUGGUGAGGGGAAGCUCGGCCACCCUUCCUUUUCCGUCGCCGGUCAUCGGAGCUCCGCCGCCCCGUGCAACCCGAGCCGCCGCCGUCGCCUCCUCGUCGCCGGCCGUCGUCGGUCGUCGUUUGGCACGAGGGUGAGUACCGUUGGGUUCGUCUCGUCGUCCUCUACGUGUUCAUGUCCUCCAAAGUCGCAGCCGACCAUCCAAUCUCCGGCGAGGUCGCCAUCUUGGUCCGGCCAUUGAUGAGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUAUGUAACGU
Sequence
(OSA-LNCN4937.4):
CGGCCGUCUUCAGCCACGCCGCGCCGUCGCUUGCGUCGUCGCCGCCGCUUGCCGCCGCCGCCGUUAGGUGCGCCGUGGUGAGGAGAACCUCGGCCGCCCGUCCCCCUUCGCCGCCGACCACCGGAGCUCCGCCGUCGCCGUCAAGCCGAGCCGCCGCCGCCGUCCUCUUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGGUUAAUUGAAGAUCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUAUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUG
Sequence
(OSA-LNCN4937.5):
CACGCCGCGCCGUCGCUUGCGUCGUCGCCGCCGCUUGCCGCCGCCGCCGUUAGGUGCGCCGUGGUGAGGAGAACCUCGGCCGCCCGUCCCCCUUCGCCGCCGACCACCGGAGCUCCGCCGUCGCCGUCAAGCCGAGCCGCCGCCGCCGUCCUCUUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGGUUAAUUGAAGAUCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUAUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGG
Sequence
(OSA-LNCN4937.6):
UGGGUACAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACCUUUCACAAUAAUUAUGGAUGUAAUAACUGGUAAUAAUUUGCUUAGCUCCUGGUUUGGAGUUAGAUCUGUUCAGCCGGGUAUGGUUGUUCAGGAUGGUUGGGCCUGUACAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAACUUCUGAUUAAUUAAUCUACUGUUUUACUACUCUUAACUCUUUGCUAAAUGCUGCUUUCGCAAAUGAGCCUAUAUUAUGCCAUCCUUUGGAAUCCUUGUGCAAGUCACACAGAUCCUAAACACAAUCCUUUGAGCAUGUUGAUCCUAUAUUUAAAUUCUCUAUUUAUUUCAACUGUGCAUUUAUUUUCGAAUGUCACCGGGUGGUGUGAACCUAUUCCUUUGUUAUGGCCAAUUUGCAUUGAAUGCCCUAUUCCUUGAUACCUUGGGUAAUAAAUUGAUUAGCUUGAACCUUAUGUAUUGGUUUGGUUCAGCUAAAAGUUAUAUAUAUAAUUGCUUAGCAAUGCUUAGAAACAUUAGCUCACUAAUGGGAUGAAUCAUAUAUACUACAUUAUUAUUUAUGGUUAUAUUUAAUGGUAGCUCACGAUGGUUAAUCGUGUGAUGUUAAUUAAUUGAUAAUUAAAACCUGGUUAAGGUGGGUUGUGAGCAUAUGGUUUUGAUGGUUGUGCUCAUGACAAUUAAGGACCGGUUCGCGAGCUACUGUUGUGAGACAUUAACCGUACCAACCACAAGCCAGCGUGGGCAACGGCUUUAUCCUUU
Sequence
(OSA-LNCN4937.7):
UGGGUACAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACCUUUCACAAUAAUUAUGGAUGUAAUAACUGGUAAUAAUUUGCUUAGCUCCUGGUUUGGAGUUAGAUCUGUUCAGCCGGGUAUGGUUGUUCAGGAUGGUUGGGCCUGUACAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAACUUCUGAUUAAUUAAUCUACUGUUUUACUACUCUUAACUCUUUGCUAAAUGCUGCUUUCGCAAAUGAGCCUAUAUUAUGCCAUCCUUUGGAAUCCUUGUGCACUUGCAAGUCACACAGAUCCUAAACACAAUCCUUUGAGCAUGUUGAUCCUAUAUUUAAAUUCUCUAUUUAUUUCAACUGUGCAUUUAUUUUCGAAUGUCACCGGGUGGUGUGAACCUAUUCCUUUGUUAUGGCCAAUUUGCAUUGAAUGCCCUAUUCCUUGAUACCUUGGGUAAUAAAUUGAUUAGCUUGAACCUUAUGUAUUGGUUUGGUUCAGCUAAAAGUUAUAUAUAUAAUUGCUUAGCAAUGCUUAGAAACAUUAGCUCACUAAUGGGAUGAAUCAUAUAUACUACAUUAUUAUUUAUGGUUAUAUUUAAUGGUAGCUCACGAUGGUUAAUCGUGUGAUGUUAAUUAAUUGAUAAUUAAAACCUGGUUAAGGUGGGUUGUGAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.52%
ME_num:
MEP:
60.77%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
6.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.41006425722253 | 0.0355089263515153 |
2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.58212062440344 | 0.0427956720656401 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.6939141627538 | 0.0218662027008172 |
4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.70168325866647 | 0.000551300987807945 |
5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.2362072795846 | 0.0356431206942797 |
6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.91603169274705 | 0.0032870464423286 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.82154247420831 | 0.0140274554229394 |