OSA-LNCN4937


Function Link


Basic Info

Chr:

Chr5

Start:

1571194

End:

1636499

Strand:

-

Ref_name:

OSA-LNCN4937

Sequence
(OSA-LNCN4937.1):

CCAACCUGAGCCGCCUCCUCUCCUCUCAGCCUAGCCGGAAAAGUCUAUUUUCCCUCCCUGCGCUACUGUUCAUCUUCCAGCUCAGGCAGAGCCCGAGCCGCCCGUGCUGUGCCCUGUGCAGCCGCCGCCUCCUCCUUCCAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAGAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCAAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUACGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUCCUCUUCCGUGCUCCGUAGCUCCGUCGCCACCGCCGCCAAGCAAACCGCCGCCGCCGGCCAUCUCCGGUGCCGCCGCGCCGCCGUCUCCAUCGUCGUCGCCGGUCUCCGUCACCACCGUUGGGUGCGCCGUGGUGAGGGGAAGCUCGGCCACCCUUCCUUUUCCGUCGCCGGUCAUCGGAGCUCCGCCGCCCCGUGCAACCCGAGCCGCCGCCGUCGCCUCCUCGUCGCCGGCCGUCGUCGGUCGUCGUUUGGCACGAGGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUCAAUGACGAUGAAUCGAGGUGAGGUCAAGACUGAAACUGUGAAACAUGCAUCUCACCAUCAGUAGGAAAAGAGGCAUUUAACAAUUUGAUGAUAGCAUCGGAGAUUCAGAGGUGCAGAUUAGCCUGAAAGUGAAAGCCCAUCUAGCUAGAGGGGACAAAUAGAAUGUGCAGACAGUGGUGCAGUAGUAGAAGACAAGUGCAAUCCUUGAUAUGAUUCAACUUGCUUGCAUUUGCAUAUCUUCUUCUUCAGAGAGAACAAAGCAGAGAGUACCAAACUCAAUGACCUUUCACUUAAUGUUUGCA

Sequence
(OSA-LNCN4937.2):

CGGCCGUCUUCAGCCACGCCGCGCCGUCGCUUGCGUCGUCGCCGCCGCUUGCCGCCGCCGCCGUUAGGUGCGCCGUGGUGAGGAGAACCUCGGCCGCCCGUCCCCCUUCGCCGCCGACCACCGGAGCUCCGCCGUCGCCGUCAAGCCGAGCCGCCGCCGCCGUCCUCUUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUAUGUAACGUCAUUAUUAAGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUGGAC

Sequence
(OSA-LNCN4937.3):

CCAACCUGAGCCGCCUCCUCUCCUCUCAGCCUAGCCGGAAAAGUCUAUUUUCCCUCCCUGCGCUACUGUUCAUCUUCCAGCUCAGGCAGAGCCCGAGCCGCCCGUGCUGUGCCCUGUGCAGCCGCCGCCUCCUCCUUCCAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAGAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCAAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUACGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUCCUCUUCCGUGCUCCGUAGCUCCGUCGCCACCGCCGCCAAGCAAACCGCCGCCGCCGGCCAUCUCCGGUGCCGCCGCGCCGCCGUCUCCAUCGUCGUCGCCGGUCUCCGUCACCACCGUUGGGUGCGCCGUGGUGAGGGGAAGCUCGGCCACCCUUCCUUUUCCGUCGCCGGUCAUCGGAGCUCCGCCGCCCCGUGCAACCCGAGCCGCCGCCGUCGCCUCCUCGUCGCCGGCCGUCGUCGGUCGUCGUUUGGCACGAGGGUGAGUACCGUUGGGUUCGUCUCGUCGUCCUCUACGUGUUCAUGUCCUCCAAAGUCGCAGCCGACCAUCCAAUCUCCGGCGAGGUCGCCAUCUUGGUCCGGCCAUUGAUGAGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUUGUAAGUAUGUAACGU

Sequence
(OSA-LNCN4937.4):

CGGCCGUCUUCAGCCACGCCGCGCCGUCGCUUGCGUCGUCGCCGCCGCUUGCCGCCGCCGCCGUUAGGUGCGCCGUGGUGAGGAGAACCUCGGCCGCCCGUCCCCCUUCGCCGCCGACCACCGGAGCUCCGCCGUCGCCGUCAAGCCGAGCCGCCGCCGCCGUCCUCUUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGGUUAAUUGAAGAUCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUAUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUG

Sequence
(OSA-LNCN4937.5):

CACGCCGCGCCGUCGCUUGCGUCGUCGCCGCCGCUUGCCGCCGCCGCCGUUAGGUGCGCCGUGGUGAGGAGAACCUCGGCCGCCCGUCCCCCUUCGCCGCCGACCACCGGAGCUCCGCCGUCGCCGUCAAGCCGAGCCGCCGCCGCCGUCCUCUUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGGUUCGUGAGUGCGUCGGAAGUGAUCAAGAAGGUUAAUUGAAGAUCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUAUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGG

Sequence
(OSA-LNCN4937.6):

UGGGUACAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACCUUUCACAAUAAUUAUGGAUGUAAUAACUGGUAAUAAUUUGCUUAGCUCCUGGUUUGGAGUUAGAUCUGUUCAGCCGGGUAUGGUUGUUCAGGAUGGUUGGGCCUGUACAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAACUUCUGAUUAAUUAAUCUACUGUUUUACUACUCUUAACUCUUUGCUAAAUGCUGCUUUCGCAAAUGAGCCUAUAUUAUGCCAUCCUUUGGAAUCCUUGUGCAAGUCACACAGAUCCUAAACACAAUCCUUUGAGCAUGUUGAUCCUAUAUUUAAAUUCUCUAUUUAUUUCAACUGUGCAUUUAUUUUCGAAUGUCACCGGGUGGUGUGAACCUAUUCCUUUGUUAUGGCCAAUUUGCAUUGAAUGCCCUAUUCCUUGAUACCUUGGGUAAUAAAUUGAUUAGCUUGAACCUUAUGUAUUGGUUUGGUUCAGCUAAAAGUUAUAUAUAUAAUUGCUUAGCAAUGCUUAGAAACAUUAGCUCACUAAUGGGAUGAAUCAUAUAUACUACAUUAUUAUUUAUGGUUAUAUUUAAUGGUAGCUCACGAUGGUUAAUCGUGUGAUGUUAAUUAAUUGAUAAUUAAAACCUGGUUAAGGUGGGUUGUGAGCAUAUGGUUUUGAUGGUUGUGCUCAUGACAAUUAAGGACCGGUUCGCGAGCUACUGUUGUGAGACAUUAACCGUACCAACCACAAGCCAGCGUGGGCAACGGCUUUAUCCUUU

Sequence
(OSA-LNCN4937.7):

UGGGUACAGUGGUACACCUCUGGCCAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGGGUUGAGCAAUGUUUUUCGUGAUUAGUCUCACACCUUUCACAAUAAUUAUGGAUGUAAUAACUGGUAAUAAUUUGCUUAGCUCCUGGUUUGGAGUUAGAUCUGUUCAGCCGGGUAUGGUUGUUCAGGAUGGUUGGGCCUGUACAGCAUGGGUGUGCUGUUCAGUGUUGAUUAAAACUUCUGAUUAAUUAAUCUACUGUUUUACUACUCUUAACUCUUUGCUAAAUGCUGCUUUCGCAAAUGAGCCUAUAUUAUGCCAUCCUUUGGAAUCCUUGUGCACUUGCAAGUCACACAGAUCCUAAACACAAUCCUUUGAGCAUGUUGAUCCUAUAUUUAAAUUCUCUAUUUAUUUCAACUGUGCAUUUAUUUUCGAAUGUCACCGGGUGGUGUGAACCUAUUCCUUUGUUAUGGCCAAUUUGCAUUGAAUGCCCUAUUCCUUGAUACCUUGGGUAAUAAAUUGAUUAGCUUGAACCUUAUGUAUUGGUUUGGUUCAGCUAAAAGUUAUAUAUAUAAUUGCUUAGCAAUGCUUAGAAACAUUAGCUCACUAAUGGGAUGAAUCAUAUAUACUACAUUAUUAUUUAUGGUUAUAUUUAAUGGUAGCUCACGAUGGUUAAUCGUGUGAUGUUAAUUAAUUGAUAAUUAAAACCUGGUUAAGGUGGGUUGUGAGC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

160

LEP:

32.52%

ME_num:

299

MEP:

60.77%

HE_num:

32

HEP:

6.5%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.89

Avg Expression:

6.96

Tip: OSA-LNCN4937 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.410064257222530.0355089263515153
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)-1.582120624403440.0427956720656401
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-4.69391416275380.0218662027008172
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.701683258666470.000551300987807945
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-1.23620727958460.0356431206942797
6Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.916031692747050.0032870464423286
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.821542474208310.0140274554229394