Chr:
Chr5
Start:
1160273
End:
1172051
Strand:
+
Ref_name:
OSA-LNCN4926
Sequence
(OSA-LNCN4926.1):
GUGGGCAGCCGGUUAUCCUUAAAAUCCUUCCCGAUUUGGGCGCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGUAAGAUGCAUACUACAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC
Sequence
(OSA-LNCN4926.2):
UGGGCAGCCGGUUAUCCUUAAAAUCCUUCCCGAUUUGGGCGCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC
Sequence
(OSA-LNCN4926.3):
GGUUAUCCUUAAAAUCCUUCCCGAUUUGGGCGCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGAUGCAUACUACAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC
Sequence
(OSA-LNCN4926.4):
GCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGUAAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC
Sequence
(OSA-LNCN4926.5):
GCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGGGCGGAUCUAGGAAAAAAUAGUAGGUGGGGCUGAACAGACUCUACCCUAGACCUCUUUAGCGGACUUAUAUUCUCGUGGUUGCGUGGAGGAUUACUGGCAUCUGUGUUGUUUAAACUAGAAUAAUACAUAAGCAUUAUUCCUUUUGGCAUGUUGACAAACUAAAAAUGUAGAAACAAUUAUAAAUUUUAAUCACUACCUCACUUGAGACACAAAUUUAGACUGUCUAUUAGUAUUAGAGGUAAAUAGGUUACCAAUUUGGCAAUUUCAACUUCAAAUAUUCAAUCACUGGCUGCUGGCUGCUGCUGCUGCAAGCUGCGUCCAGCGGACCAGCGUCCUUGCGCCCUCGCGGCCUCGCUGGCUCGCGGGUCACCACCUCCCCGUCGGCGCGAGCGCGCAGCGGCACUGGAGCUGGACCGUCACCUAGCCGCCUCCUGUCGGCGCGUCGGCGCAGGACCGCCGCCUGGCGGCUGGCGCCCUGGCCCGUCUUGCCACCUCCCCGGCGGGCGCGCCGGCGCUGGACCGCCGCCUGGCCGCGGGCCGCCUCCCUUCCCGGCUUCCCGCCCUCCGGGCCCCUCGUCCGCUCAUGGCUCGCUAGCCGCCGCCGCCGCCUGCUUGCCGCUCGCCGCACGCCCACGGGGCCACGGGCCACGCUGCCUCCUAGCUCCCGCCCUCGUCAGCCGGUGUCGCCACCGGGCGUCGGGCGCCUCGCCACCACGGCCGCCUCCCGUCGCCGGUCGCCCAUCGGCCCGCGUCCAUGGCCGGUCAAACGCUACUACACUAGUGUUAGGGAUUUGGUAGACAGGGAGAGAGAACGGCGGCUGGGCGGCUGGGGAAUUCAGAGAAGGGAGAGGGAGAGG
Sequence
(OSA-LNCN4926.6):
UUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGUAAGGAUCGGACGAUUCCAAUUUUUUGUUUGGUUAUUAAAAGGAUAAGGGAGAGAUGGGAUGGAUGGUGUUUGCAACCACCGUCAACAACCGGGCAGGCUUGCGAGCACGCAAGCCGGUGUAAUUCGCAAGCAUGCAAAGAAGCGGUAUGCAAAAUAGGCCGGUGGGCGGACAAGCAAGCCAACAACUAGCAAAAGAAAGAGCGGUGAGGGCGGGCUUGCAAGAUGGAUGACGGCGGGCGGAGGUGUGUGACGAUGGCCUAGUGAACGGAGGAGCUUGCAUUUACGGGCGAAGGAGCAGCGUAGGCAGGCGAGCAAGCCGGUGGGUCGAGGAGCAUGACCAGCAGGUAACGGUGUGAGCAAGCAGGCGACCGAGCGCGCAAGCAUGCGGGGUGAAGCGACGCGACUCACGCCGUGCGCCCAACCCAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.33%
ME_num:
MEP:
37.4%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
2.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 5.69058061390414 | 2.30109446704057e-09 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.89497070707358 | 6.46265489068818e-10 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.93655160739835 | 0.0379773727078507 |
4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.73531745686568 | 8.8401795995978e-05 |
5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.29102472723328 | 0.04318277876433 |
6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.58492653525809 | 0.0351846021345137 |
7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.45681530567468 | 0.00490072179124195 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.59292518603953 | 0.00210885855181182 |