OSA-LNCN4926


Function Link


Basic Info

Chr:

Chr5

Start:

1160273

End:

1172051

Strand:

+

Ref_name:

OSA-LNCN4926

Sequence
(OSA-LNCN4926.1):

GUGGGCAGCCGGUUAUCCUUAAAAUCCUUCCCGAUUUGGGCGCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGUAAGAUGCAUACUACAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC

Sequence
(OSA-LNCN4926.2):

UGGGCAGCCGGUUAUCCUUAAAAUCCUUCCCGAUUUGGGCGCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC

Sequence
(OSA-LNCN4926.3):

GGUUAUCCUUAAAAUCCUUCCCGAUUUGGGCGCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGAUGCAUACUACAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC

Sequence
(OSA-LNCN4926.4):

GCCCCGUUUUUCUUCUUUUCUUUUUUCUUUUUUUUUCCCUUCUCUUCUCUCAUUUGCUCAGGUCCUCGUUUGGCCAAAAGGGCUUAUUAGGAAAUAAAAAUAUAUUUAUAGGUGAAACUUUUAUAAAUAUGCUUUUGGUGACUUAAAAGUUAAUAUUGAAAAAGAAACUACAUUAAAAAUAUCUUAAAAUUAAGCUGGAAAAUUUAAAAUUUGACUUUUUCUUUGAUUGAUUAGGCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGUAAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC

Sequence
(OSA-LNCN4926.5):

GCCAUUUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGGGCGGAUCUAGGAAAAAAUAGUAGGUGGGGCUGAACAGACUCUACCCUAGACCUCUUUAGCGGACUUAUAUUCUCGUGGUUGCGUGGAGGAUUACUGGCAUCUGUGUUGUUUAAACUAGAAUAAUACAUAAGCAUUAUUCCUUUUGGCAUGUUGACAAACUAAAAAUGUAGAAACAAUUAUAAAUUUUAAUCACUACCUCACUUGAGACACAAAUUUAGACUGUCUAUUAGUAUUAGAGGUAAAUAGGUUACCAAUUUGGCAAUUUCAACUUCAAAUAUUCAAUCACUGGCUGCUGGCUGCUGCUGCUGCAAGCUGCGUCCAGCGGACCAGCGUCCUUGCGCCCUCGCGGCCUCGCUGGCUCGCGGGUCACCACCUCCCCGUCGGCGCGAGCGCGCAGCGGCACUGGAGCUGGACCGUCACCUAGCCGCCUCCUGUCGGCGCGUCGGCGCAGGACCGCCGCCUGGCGGCUGGCGCCCUGGCCCGUCUUGCCACCUCCCCGGCGGGCGCGCCGGCGCUGGACCGCCGCCUGGCCGCGGGCCGCCUCCCUUCCCGGCUUCCCGCCCUCCGGGCCCCUCGUCCGCUCAUGGCUCGCUAGCCGCCGCCGCCGCCUGCUUGCCGCUCGCCGCACGCCCACGGGGCCACGGGCCACGCUGCCUCCUAGCUCCCGCCCUCGUCAGCCGGUGUCGCCACCGGGCGUCGGGCGCCUCGCCACCACGGCCGCCUCCCGUCGCCGGUCGCCCAUCGGCCCGCGUCCAUGGCCGGUCAAACGCUACUACACUAGUGUUAGGGAUUUGGUAGACAGGGAGAGAGAACGGCGGCUGGGCGGCUGGGGAAUUCAGAGAAGGGAGAGGGAGAGG

Sequence
(OSA-LNCN4926.6):

UUGAUGGUAGCCUCAUUUGGUGUGUGCGUGCGCCUGCCAUUGGUUGCUUGCUCUGGGCUCAAAAUAUCUUUCCUGACAGAGGGCCCAAGGCCAAGGGUAGGAGUAGCUUGGAAAUAUGAAGCUACGUGGCUGCCUCCAUCGUAUGUAAGGUAAGGAUCGGACGAUUCCAAUUUUUUGUUUGGUUAUUAAAAGGAUAAGGGAGAGAUGGGAUGGAUGGUGUUUGCAACCACCGUCAACAACCGGGCAGGCUUGCGAGCACGCAAGCCGGUGUAAUUCGCAAGCAUGCAAAGAAGCGGUAUGCAAAAUAGGCCGGUGGGCGGACAAGCAAGCCAACAACUAGCAAAAGAAAGAGCGGUGAGGGCGGGCUUGCAAGAUGGAUGACGGCGGGCGGAGGUGUGUGACGAUGGCCUAGUGAACGGAGGAGCUUGCAUUUACGGGCGAAGGAGCAGCGUAGGCAGGCGAGCAAGCCGGUGGGUCGAGGAGCAUGACCAGCAGGUAACGGUGUGAGCAAGCAGGCGACCGAGCGCGCAAGCAUGCGGGGUGAAGCGACGCGACUCACGCCGUGCGCCCAACCCAGGAAAGGAAGUGUGGACUGUAUAGCAAUGGAGACAAGGAACUGUUGGGGGAUUGAUGAGGCAAAGUUAUCCUAUCUUUUUUGUUGCAUUGACAGCAAGUAAAGUGAGAAAAGAUGCAAAAACAAAAGGAGAAGAUGCAAAACUAGGGUUGGCCCAUCAGUUCCAUCCAAUGGAGAACCUACGCACAGCACAGCCACUAUUUUUAUGUUGCGAUGCGCGAAAUUAUUGAGGGCCCCAGAUUUCCAUUUCGGGGUGGUUGGCCCCACCCACGAAAUAUUCCAUGUAAUGUUUCAAUUUCCCACUUUAGUAAGAAAACUAAAGAAGAGUCAUUAUGUACGGCACUUGUACUAGCUAACUCCAGUACUGCCUGACUAGCAGUCUUAGUAGAAGAAAAUAAUAACAAAUGCGCUUCGAAAAGCAAAUCCAAAUUCACAGCAGCAUCUCAUAAACUCUUAAAUCAUUGUACAGGCAAAAAAAUAUGAAUAUCUCUAUAUAUUGCUACCAC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

287

LEP:

58.33%

ME_num:

184

MEP:

37.4%

HE_num:

20

HEP:

4.07%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.87

Avg Expression:

2.52

Tip: OSA-LNCN4926 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h5.690580613904142.30109446704057e-09
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA3.894970707073586.46265489068818e-10
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP22861.936551607398350.0379773727078507
4WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.735317456865688.8401795995978e-05
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_121.291024727233280.04318277876433
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73411.584926535258090.0351846021345137
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.456815305674680.00490072179124195
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA2.592925186039530.00210885855181182