Chr:
Chr5
Start:
998145
End:
998873
Strand:
+
Ref_name:
OSA-LNCN4921
Sequence
(OSA-LNCN4921.1):
AACGAUUAAAAUUGUACGAACAGAAUUCCACCGUUCUUUGUCUGAAUCACCAAAAACAGAGGAUUCAAACCGUGUGUUUUUCACGCUAAAAUUGAAAGUUUGAUUGAAAUUGGAAUGAUAUGAGGGAAUAAGAUCAAAAAAGGGUCUAAAUUGGGGAUAGAUCCUAUCAAUGCAAAAUCUAUGAAAUAGAAACAGCAAAUUGAUCCAACCUAAUACUACUACCGAUCAAUUCGACGAAUCGAGCCGAACAGGAACAAAAUCACAAUUCCAAUUAAGCGACUAUAUAUAAUCAUCACAAGUUCACAACAGAAUCGAACAGGAACAAGAACGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
38.01%
HE_num:
HEP:
35.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.68
Avg Expression:
10.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.26801801342593 | 1.25808268080592e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.98672176361615 | 0.000150562152717684 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.72399636552004 | 0.00105583272946841 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.0951936802381 | 1.73242333394763e-21 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.60786498780194 | 1.36901466682913e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.96149535527884 | 6.09788295835795e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.31795108878128 | 6.28604723506971e-15 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.85830933120572 | 7.74234245430552e-22 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.82642052938873 | 0.00125433135622354 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.35040176337843 | 0.0376492786511411 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.3991836764103 | 2.99240763909405e-15 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.63634591118848 | 0.0281395126412352 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.01497584351734 | 2.25352401295888e-11 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.57763588973718 | 7.27797227677821e-08 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.69850106300088 | 0.000105468320971247 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.69840881186302 | 0.000109941348547968 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.69831876756391 | 0.000106252503953755 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.28291550674408 | 0.0424189247203312 |
| 19 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.253724226999 | 0.0095456471549258 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.26440117431263 | 1.85541072626483e-06 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.90700986564547 | 5.89174036885642e-10 |