Chr:
Chr5
Start:
541176
End:
541818
Strand:
-
Ref_name:
OSA-LNCN4916
Sequence
(OSA-LNCN4916.1):
AGCACGGUGAAGAAGAAUCAACGUGGUCGAUCGGCUCAACAUGCAUGGCCGGCCGUGUGGGUCUUGAAGAUGUGUGUGAUCUGUCAUCCGCAUGGGUUGAGAUAGUACAGAUGCAGUACAAGGAGGGAGAUGGCAAGUUGUUGUGACCAUCUGCAAACUGAUCGUGUCUGUUUCACCCACUUCUUUUACUCUCUAACAUUUCUCACCCAACAUCAAAGCAGUAUAUAUAUACUGUCCGUCUGCCUGUCUGGUUCAUCACAUAUCAAGAAUUUUCUGGACCUAAGCUAGGAAUAGAAGUUGCAAAGCCUGUAAUUCAUCGGAGCUGAUCGAACACAUAUGGUUUUCUUCAUAGACAUAACAGAGGUGAAGAGUGUGAUUGCAUCCGAGCUCCAAUCUUCAAGCUUUACAUGGAGGUAAAAAAAAAAGGUGUAGUAGGAUGUUUACUACAUCUGACAAUGCGCAGGAGAUGUCAACACACGCAAGGAAAGAAAAUUGACUUUCUCCGUGUUGCUUGCGGUUAUAACUCAGCCACCUAAGUAAAAGGAAUCAGGGAGAAAAUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.07%
ME_num:
MEP:
7.52%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.98
Avg Expression:
4.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.97457692688659 | 0.0244500049755951 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.83199871592146 | 0.00852173762796963 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.39034612890899 | 0.044029169151355 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.42776469767859 | 0.00821874302259774 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.39574362920493 | 0.026248929011262 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.16290807177082 | 0.00279159980079938 |