Chr:
Chr5
Start:
462314
End:
462760
Strand:
.
Ref_name:
OSA-LNCN4908
Sequence
(OSA-LNCN4908.1):
GAAUCCGUCUAUCCAUGAUCCAGUUGAGGGUUUUUUCUUUCUUUAUUUAAUUUAUUUAUGUUAAUUGCGUUGGAGAAUAUGUGAGGAUGGGACAGGCUCAUUCCUUUUGAGCACUAUGCGGAUUCAUUUGAUGACAUGCCCUUGUAUCAGACCUAUCUUGAUUAGUUUUUUCAUGUCAAUGCCAAUGAAAUUGUUACUGCUGCUUAUCAUCUUUAUUUUAAUAAUGUUGCCUUGCAUGUAUCUAUACCUCCCUCUCUCAAUCUGUCUAAAAAUUUUCUUCUUCUUACACUAAACUCUGUACUUCAAAUAAGGAUAAAUCUUCUCGCUGGCAACAAACAGUUUCUCCCAUAGUGAUGUUCUAUGCCUCCCUCUCUCAAUCUGUCUAAAAAUUUUCUUCUUCUUACACUAAACACUGUAUUGCAAAUAAGGAUAAAUCGUCUCGCUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.34%
ME_num:
MEP:
3.46%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.90
Avg Expression:
0.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.75948927701957 | 0.042336294571598 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.22682494365821 | 0.0304452030369107 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.23081117295498 | 0.04050326698441 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.25805831274506 | 0.00257680992397103 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.42628090866706 | 0.0070349104342074 |