RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4906

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

299671

End:

301385

Strand:

-

Ref_name:

OSA-LNCN4906

Sequence
(OSA-LNCN4906.1):

CGCGCGGAACAAAUAAAUGUCUGGCCUUGCAGCAUGAAACAAUCCAAGAAACGGUGAAGUGCAACUAUCCAACCCAACUUGUAGGGGUGAAGUGCAACUAUCCAACCCAACUUGUAGGGGAAGGAGACGAAGGAGGGAUUGGAUUGGAAGCGGGGGUGAACAGGGUGGGUGUCUUAAAUUGGAAGAAAGGCUCCACCUUUGGGUUUGGAUUUGGAUUGCUUGUGAACAGGGUGGGUGGCUUAAAUCGGAAGAAAGGCUCCACCUUUGGGUUUGGAUUUGGAUUGCUUGCGCGAAAAAGAUUUUUUUUUGCUUGGAAAGAUGGGAGCGGAAGAGUUGACGAAAUCGAGCGUGUGGGCAACACCUGGCAAGAUCUGACAAAAAAGGUGACUGAAUCUCUUCCUCAAAUCAAUCGAAGAGGAGGUGAGGUGGGGAAGUAGAAUUAAUUUAAUGGGGAAAGGCACUUUUACAUAUUAACCCCUAUCUAUCUAGUUGAUAGUUUUUGGAGGUGAGGUGGGAAAGUGGAAUUAAUUUAAUGGAGAAAGGCACUUUUACAUAUUAACCCCUAUCUAUCUAGUUUUUGGAUAUUAAAAUUUCAAGUAAAUUGGUGUUACAUAUGCAUAAUUACCAUUCCCUUAGUAUAUACUACUCCAUUUGUUUGGUUUAAUUUAGGUGGACUAGCAAAAUGCCCGUGCAUUGCAACGGAUGAAAACAAUACAAUUUUAAUAAUUAAUCUGUCGCAUGGUAAAUCAUACAUUUCACUCAUUGACAUUUAAUAAAUAAUACGUGAAAAUAUUUAGAAAUACAUCAACAUCAUUGUUUAUUAAUAAUAUUUUUCCUUUAAUGAUUUUAACUUACAUUUUAUUAUGUUCUCACUUACAUAUAAAUUUAUAUUUUUCUUUAAUUUUAAGUAUGAAUCGUACUUAAAAUUUAUAAAAAUAUUGAAUUAAUAUUGUUUCUAACAUUUUAUUGUUAUUAGAUUGUACUUGGCACAUAUCAUUUUGCAUUUUUAUUCUAAACUAUAGUUUAUUUGAAUUUAUUAAUUACCUAAUUUAAAUAUCUAUAUUAUUAGUCUAAAUUAUUUUUAAAAUUAAAAACAUUAAAAUAUUAUAGAUAUAUCACAAUGUUUUAGGGACGGGAAGACAAAGUACGUUCAAUGGUUUCAAUUUAUAACCUGAUAAAGAAAGAAUGUUAAAUUAGAUUCAUGCAAGUGGCACAAAUGUCUUUUAGAAAAUUUAUAACCUGAUAAAGAAAAAAAAGUUAAAUUAGAUUAAUGCCAAGUGUGACAGUAUGUCCUUUAGAAAAUUUUGUGGAAUGAAAAUUUCUUAUAAGAAUAUACCUUGAUAAAAAGAUAUUUUGUGUGACUAUGAGUAGUUUGUGGUCUAGAUUCUUCUUAAGAAAUUUAUGUGAGUUUGGAUGAGCACAAAUUAUGUGAGCUUACAUGUUUCGUUCUAAGGGUGUUUGGAUGACCAAAUUACAUCUGCUAUAAUAAAAAUGGAAAUCAAAAUUAACAACAAGUUGGAAGUAGGUGGAGCUGGGCAGAGGCAGAUCUAACCCUGUUUCGGUUGAACCCCCAAACUUUUUGAGGGAUAACGCAGAAUACCUGAUGAGGUACGGUGUGGGUAGGGAGGGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

10

LEP:

2.03%

ME_num:

357

MEP:

72.56%

HE_num:

124

HEP:

25.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.59

Avg Expression:

7.89

Tip: OSA-LNCN4906 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.066841652282170.024243718798012
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)-3.003833770133540.0338399067787297